Literature DB >> 27150399

The landscape of DNA methylation amid a perfect storm of autism aetiologies.

Annie Vogel Ciernia1, Janine LaSalle1.   

Abstract

Increasing evidence points to a complex interplay between genes and the environment in autism spectrum disorder (ASD), including rare de novo mutations in chromatin genes such as methyl-CpG binding protein 2 (MECP2) in Rett syndrome. Epigenetic mechanisms such as DNA methylation act at this interface, reflecting the plasticity in metabolic and neurodevelopmentally regulated gene pathways. Genome-wide studies of gene sequences, gene pathways and DNA methylation are providing valuable mechanistic insights into ASD. The dynamic developmental landscape of DNA methylation is vulnerable to numerous genetic and environmental insults: therefore, understanding pathways that are central to this 'perfect storm' will be crucial to improving the diagnosis and treatment of ASD.

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Year:  2016        PMID: 27150399      PMCID: PMC4966286          DOI: 10.1038/nrn.2016.41

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  130 in total

1.  DNA-binding factors shape the mouse methylome at distal regulatory regions.

Authors:  Michael B Stadler; Rabih Murr; Lukas Burger; Robert Ivanek; Florian Lienert; Anne Schöler; Erik van Nimwegen; Christiane Wirbelauer; Edward J Oakeley; Dimos Gaidatzis; Vijay K Tiwari; Dirk Schübeler
Journal:  Nature       Date:  2011-12-14       Impact factor: 49.962

2.  Covalent modification of DNA regulates memory formation.

Authors:  Courtney A Miller; J David Sweatt
Journal:  Neuron       Date:  2007-03-15       Impact factor: 17.173

3.  DNA Demethylation Dynamics in the Human Prenatal Germline.

Authors:  Sofia Gkountela; Kelvin X Zhang; Tiasha A Shafiq; Wen-Wei Liao; Joseph Hargan-Calvopiña; Pao-Yang Chen; Amander T Clark
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

4.  Methylation, memory and addiction.

Authors:  Purva Bali; Heh-In Im; Paul J Kenny
Journal:  Epigenetics       Date:  2011-06-01       Impact factor: 4.528

5.  Folate status of mothers during pregnancy and mental and psychomotor development of their children at five years of age.

Authors:  Tsunenobu Tamura; Robert L Goldenberg; Victoria R Chapman; Kelley E Johnston; Sharon L Ramey; Kathleen G Nelson
Journal:  Pediatrics       Date:  2005-09       Impact factor: 7.124

Review 6.  Immune mediators in the brain and peripheral tissues in autism spectrum disorder.

Authors:  Myka L Estes; A Kimberley McAllister
Journal:  Nat Rev Neurosci       Date:  2015-08       Impact factor: 34.870

7.  Maternal hospitalization with infection during pregnancy and risk of autism spectrum disorders.

Authors:  Brian K Lee; Cecilia Magnusson; Renee M Gardner; Åsa Blomström; Craig J Newschaffer; Igor Burstyn; Håkan Karlsson; Christina Dalman
Journal:  Brain Behav Immun       Date:  2014-09-16       Impact factor: 7.217

8.  Somatic coding mutations in human induced pluripotent stem cells.

Authors:  Athurva Gore; Zhe Li; Ho-Lim Fung; Jessica E Young; Suneet Agarwal; Jessica Antosiewicz-Bourget; Isabel Canto; Alessandra Giorgetti; Mason A Israel; Evangelos Kiskinis; Je-Hyuk Lee; Yuin-Han Loh; Philip D Manos; Nuria Montserrat; Athanasia D Panopoulos; Sergio Ruiz; Melissa L Wilbert; Junying Yu; Ewen F Kirkness; Juan Carlos Izpisua Belmonte; Derrick J Rossi; James A Thomson; Kevin Eggan; George Q Daley; Lawrence S B Goldstein; Kun Zhang
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

9.  Increased methylation variation in epigenetic domains across cancer types.

Authors:  Kasper Daniel Hansen; Winston Timp; Héctor Corrada Bravo; Sarven Sabunciyan; Benjamin Langmead; Oliver G McDonald; Bo Wen; Hao Wu; Yun Liu; Dinh Diep; Eirikur Briem; Kun Zhang; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

10.  Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.

Authors:  Alisa Mo; Eran A Mukamel; Fred P Davis; Chongyuan Luo; Gilbert L Henry; Serge Picard; Mark A Urich; Joseph R Nery; Terrence J Sejnowski; Ryan Lister; Sean R Eddy; Joseph R Ecker; Jeremy Nathans
Journal:  Neuron       Date:  2015-06-17       Impact factor: 17.173

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  60 in total

Review 1.  Brain Connectivity and Neuroimaging of Social Networks in Autism.

Authors:  Ralph-Axel Müller; Inna Fishman
Journal:  Trends Cogn Sci       Date:  2018-10-31       Impact factor: 20.229

2.  Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.

Authors:  Ryan K C Yuen; Daniele Merico; Matt Bookman; Jennifer L Howe; Bhooma Thiruvahindrapuram; Rohan V Patel; Joe Whitney; Nicole Deflaux; Jonathan Bingham; Zhuozhi Wang; Giovanna Pellecchia; Janet A Buchanan; Susan Walker; Christian R Marshall; Mohammed Uddin; Mehdi Zarrei; Eric Deneault; Lia D'Abate; Ada J S Chan; Stephanie Koyanagi; Tara Paton; Sergio L Pereira; Ny Hoang; Worrawat Engchuan; Edward J Higginbotham; Karen Ho; Sylvia Lamoureux; Weili Li; Jeffrey R MacDonald; Thomas Nalpathamkalam; Wilson W L Sung; Fiona J Tsoi; John Wei; Lizhen Xu; Anne-Marie Tasse; Emily Kirby; William Van Etten; Simon Twigger; Wendy Roberts; Irene Drmic; Sanne Jilderda; Bonnie MacKinnon Modi; Barbara Kellam; Michael Szego; Cheryl Cytrynbaum; Rosanna Weksberg; Lonnie Zwaigenbaum; Marc Woodbury-Smith; Jessica Brian; Lili Senman; Alana Iaboni; Krissy Doyle-Thomas; Ann Thompson; Christina Chrysler; Jonathan Leef; Tal Savion-Lemieux; Isabel M Smith; Xudong Liu; Rob Nicolson; Vicki Seifer; Angie Fedele; Edwin H Cook; Stephen Dager; Annette Estes; Louise Gallagher; Beth A Malow; Jeremy R Parr; Sarah J Spence; Jacob Vorstman; Brendan J Frey; James T Robinson; Lisa J Strug; Bridget A Fernandez; Mayada Elsabbagh; Melissa T Carter; Joachim Hallmayer; Bartha M Knoppers; Evdokia Anagnostou; Peter Szatmari; Robert H Ring; David Glazer; Mathew T Pletcher; Stephen W Scherer
Journal:  Nat Neurosci       Date:  2017-03-06       Impact factor: 24.884

3.  Testing for the indirect effect under the null for genome-wide mediation analyses.

Authors:  Richard Barfield; Jincheng Shen; Allan C Just; Pantel S Vokonas; Joel Schwartz; Andrea A Baccarelli; Tyler J VanderWeele; Xihong Lin
Journal:  Genet Epidemiol       Date:  2017-10-29       Impact factor: 2.135

Review 4.  Genetics and epigenetic factors of Wilson disease.

Authors:  Valentina Medici; Janine M LaSalle
Journal:  Ann Transl Med       Date:  2019-04

5.  Extremely low gestational age and very low birthweight for gestational age are risk factors for autism spectrum disorder in a large cohort study of 10-year-old children born at 23-27 weeks' gestation.

Authors:  Robert M Joseph; Steven J Korzeniewski; Elizabeth N Allred; T Michael O'Shea; Tim Heeren; Jean A Frazier; Janice Ware; Deborah Hirtz; Alan Leviton; Karl Kuban
Journal:  Am J Obstet Gynecol       Date:  2016-11-12       Impact factor: 8.661

6.  Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes.

Authors:  Keith W Dunaway; M Saharul Islam; Rochelle L Coulson; S Jesse Lopez; Annie Vogel Ciernia; Roy G Chu; Dag H Yasui; Isaac N Pessah; Paul Lott; Charles Mordaunt; Makiko Meguro-Horike; Shin-Ichi Horike; Ian Korf; Janine M LaSalle
Journal:  Cell Rep       Date:  2016-12-13       Impact factor: 9.423

Review 7.  Gene regulatory mechanisms underlying sex differences in brain development and psychiatric disease.

Authors:  Devanand S Manoli; Jessica Tollkuhn
Journal:  Ann N Y Acad Sci       Date:  2018-01-24       Impact factor: 5.691

8.  Microglia from offspring of dams with allergic asthma exhibit epigenomic alterations in genes dysregulated in autism.

Authors:  Annie Vogel Ciernia; Milo Careaga; Janine M LaSalle; Paul Ashwood
Journal:  Glia       Date:  2017-11-14       Impact factor: 7.452

9.  Allergic disease and low ASQ communication score in children.

Authors:  Aishwarya P Yadama; Rachel S Kelly; Kathleen Lee-Sarwar; Hooman Mirzakhani; Su H Chu; Priyadarshini Kachroo; Augusto A Litonjua; Jessica Lasky-Su; Scott T Weiss
Journal:  Brain Behav Immun       Date:  2019-10-10       Impact factor: 7.217

Review 10.  Are endocrine disrupting compounds environmental risk factors for autism spectrum disorder?

Authors:  Amer Moosa; Henry Shu; Tewarit Sarachana; Valerie W Hu
Journal:  Horm Behav       Date:  2017-10-23       Impact factor: 3.587

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