Literature DB >> 25996186

Bacterial d-amino acid oxidases: Recent findings and future perspectives.

Shouji Takahashi1, Katsumasa Abe, Yoshio Kera.   

Abstract

D-Amino acid oxidase (DAO) is a flavin enzyme that catalyzes the oxidative deamination of d-amino acids. This enzyme has been studied extensively both biochemically and structurally as a model for the oxidase-dehydrogenase class of flavoproteins. This enzyme also has various applications, such as the determination of d-amino acids and production of building blocks for a number of pharmaceuticals. DAO has been found mainly in eukaryotic organisms and has been suggested to play a significant role in various cellular processes, one of which includes neurotransmission in the human brain. In contrast, this enzyme has not been identified in prokaryotic organisms. Some studies have recently identified and characterized DAO enzyme in some actinobacteria. In addition, a genome database search reveals a wide distribution of DAO homologous genes in this bacterial group. The bacterial DAOs characterized so far have certain distinct properties in comparison to eukaryotic DAOs. These enzymes also exhibit some important applicable properties, suggesting that bacteria could be used as a source for obtaining novel and useful DAOs. The physiological function of bacterial DAO have been proposed to include the degradation of non-canonical d-amino acids released from cell wall, but is still largely unknown and need to be studied in depth.

Entities:  

Keywords:  bacteria; d-amino acid oxidase; enzymatic properties; flavin enzyme; physiological role; potential applications; structure

Mesh:

Substances:

Year:  2015        PMID: 25996186      PMCID: PMC4601262          DOI: 10.1080/21655979.2015.1052917

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  26 in total

1.  Enzymatic detection of D-amino acids.

Authors:  Gianluca Molla; Luciano Piubelli; Federica Volontè; Mirella S Pilone
Journal:  Methods Mol Biol       Date:  2012

2.  The taste of L- and D-amino acids.

Authors:  J Solms; L Vuataz; R H Egli
Journal:  Experientia       Date:  1965-12-15

3.  Comparative characterization of three D-aspartate oxidases and one D-amino acid oxidase from Caenorhabditis elegans.

Authors:  Masumi Katane; Yasuaki Saitoh; Yousuke Seida; Masae Sekine; Takemitsu Furuchi; Hiroshi Homma
Journal:  Chem Biodivers       Date:  2010-06       Impact factor: 2.408

4.  D-aspartate oxidase from beef kidney. Purification and properties.

Authors:  A Negri; V Massey; C H Williams
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

5.  Regulation of D-amino acid oxidase expression in the yeast Rhodotorula gracilis.

Authors:  Gianluca Molla; Laura Motteran; Luciano Piubelli; Mirella S Pilone; Loredano Pollegioni
Journal:  Yeast       Date:  2003-09       Impact factor: 3.239

6.  Subunit fusion of two yeast D-amino acid oxidases enhances their thermostability and resistance to H2O2.

Authors:  Shih-Juei Wang; Chi-Yang Yu; Cheng-Kang Lee; Ming-Kai Chern; I-Ching Kuan
Journal:  Biotechnol Lett       Date:  2008-03-11       Impact factor: 2.461

7.  A Highly Stable D-Amino Acid Oxidase of the Thermophilic Bacterium Rubrobacter xylanophilus.

Authors:  Shouji Takahashi; Makoto Furukawara; Keishi Omae; Namiho Tadokoro; Yayoi Saito; Katsumasa Abe; Yoshio Kera
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

Review 8.  Structure-function relationships in human D-amino acid oxidase.

Authors:  Silvia Sacchi; Laura Caldinelli; Pamela Cappelletti; Loredano Pollegioni; Gianluca Molla
Journal:  Amino Acids       Date:  2012-08-03       Impact factor: 3.520

9.  Molecular characterization of D-amino acid oxidase from common carp Cyprinus carpio and its induction with exogenous free D-alanine.

Authors:  Mohammed Golam Sarower; Shigeru Okada; Hiroki Abe
Journal:  Arch Biochem Biophys       Date:  2003-12-01       Impact factor: 4.013

10.  D-amino acids govern stationary phase cell wall remodeling in bacteria.

Authors:  Hubert Lam; Dong-Chan Oh; Felipe Cava; Constantin N Takacs; Jon Clardy; Miguel A de Pedro; Matthew K Waldor
Journal:  Science       Date:  2009-09-18       Impact factor: 47.728

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  9 in total

1.  X-ray structure analysis of a unique D-amino-acid oxidase from the thermophilic fungus Rasamsonia emersonii strain YA.

Authors:  Yuya Shimekake; Yuki Hirato; Rikako Funabashi; Sayoko Okazaki; Masaru Goto; Takehiro Furuichi; Hideyuki Suzuki; Yoshio Kera; Shouji Takahashi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-10-23       Impact factor: 1.056

2.  Development of a Combination Fermentation Strategy to Simultaneously Increase Biomass and Enzyme Activity of D-amino Acid Oxidase Expressed in Escherichia coli.

Authors:  Jian-Miao Xu; Hui-Ting Cao; Ming Wang; Bao-Jian Ma; Liu-Yu Wang; Kai Zhang; Feng Cheng; Ya-Ping Xue; Yu-Guo Zheng
Journal:  Appl Biochem Biotechnol       Date:  2021-02-04       Impact factor: 2.926

3.  Diversity and distribution of viruses inhabiting the deepest ocean on Earth.

Authors:  Huahua Jian; Yi Yi; Jiahua Wang; Yali Hao; Mujie Zhang; Siyuan Wang; Canxing Meng; Yue Zhang; Hongmei Jing; Yinzhao Wang; Xiang Xiao
Journal:  ISME J       Date:  2021-05-10       Impact factor: 11.217

Review 4.  Distribution in Different Organisms of Amino Acid Oxidases with FAD or a Quinone As Cofactor and Their Role as Antimicrobial Proteins in Marine Bacteria.

Authors:  Jonatan C Campillo-Brocal; Patricia Lucas-Elío; Antonio Sanchez-Amat
Journal:  Mar Drugs       Date:  2015-12-16       Impact factor: 5.118

5.  Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production.

Authors:  Jasna Kovac; Kevin J Cummings; Lorraine D Rodriguez-Rivera; Laura M Carroll; Anil Thachil; Martin Wiedmann
Journal:  Front Microbiol       Date:  2017-05-01       Impact factor: 5.640

6.  Enhanced Bacterial Growth and Gene Expression of D-Amino Acid Dehydrogenase With D-Glutamate as the Sole Carbon Source.

Authors:  Takeshi Naganuma; Yoshiakira Iinuma; Hitomi Nishiwaki; Ryota Murase; Kazuo Masaki; Ryosuke Nakai
Journal:  Front Microbiol       Date:  2018-09-04       Impact factor: 5.640

7.  TyrR is involved in the transcriptional regulation of biofilm formation and D-alanine catabolism in Azospirillum brasilense Sp7.

Authors:  Saúl Jijón-Moreno; Beatriz Eugenia Baca; Diana Carolina Castro-Fernández; Alberto Ramírez-Mata
Journal:  PLoS One       Date:  2019-02-14       Impact factor: 3.240

8.  d-Amino Acids Are Exuded by Arabidopsis thaliana Roots to the Rhizosphere.

Authors:  Claudia Hener; Sabine Hummel; Juan Suarez; Mark Stahl; Üner Kolukisaoglu
Journal:  Int J Mol Sci       Date:  2018-04-07       Impact factor: 5.923

Review 9.  d-amino Acids in Health and Disease: A Focus on Cancer.

Authors:  Jacco J A J Bastings; Hans M van Eijk; Steven W Olde Damink; Sander S Rensen
Journal:  Nutrients       Date:  2019-09-12       Impact factor: 5.717

  9 in total

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