Literature DB >> 25995870

Crystal structure of 2-methyl-1H-imidazol-3-ium aqua-tri-chlorido-(oxalato-κ(2) O,O')stannate(IV).

Mouhamadou Birame Diop1, Libasse Diop1, Laurent Plasseraud2, Thierry Maris3.   

Abstract

The tin(IV) atom in the complex anion of the title salt, (C4H7N2)[Sn(C2O4)Cl3(H2O)], is in a distorted octa-hedral coordination environment defined by three chlorido ligands, an oxygen atom from a water mol-ecule and two oxygen atoms from a chelating oxalate anion. The organic cation is linked through a bifurcated N-H⋯O hydrogen bond to the free oxygen atoms of the oxalate ligand of the complex [Sn(H2O)Cl3(C2O4)](-) anion. Neighbouring stannate(IV) anions are linked through O-H⋯O hydrogen bonds involving the water mol-ecule and the two non-coordinating oxalate oxygen atoms. In combination with additional N-H⋯Cl hydrogen bonds between cations and anions, a three-dimensional network is spanned.

Entities:  

Keywords:  crystal structure; hydrogen bonds; organotin(IV) complex

Year:  2015        PMID: 25995870      PMCID: PMC4420124          DOI: 10.1107/S2056989015005988

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical Context

With many applications found in catalysis (see, for example: Meneghetti & Meneghetti, 2015 ▸) or as a result of their biological activities (Sirajuddin et al., 2014 ▸), organotin(IV) complexes are still a widely studied class of compounds. For more than two decades, the Senegalese group has focused research on attempts to obtain new halo- and organotin(IV) compounds, especially compounds with oxalato ligands (Gueye et al., 2010 ▸, 2012 ▸, 2014 ▸; Sarr et al., 2015 ▸; Sow et al., 2012 ▸, 2013 ▸). In this communication we report on the inter­action between methyl-2-imidazolium hydrogenoxalate dihydrate and SnCl2·2H2O in methano­lic solution, which yielded the title compound, (C4H7N2)[Sn(C2O4)Cl3(H2O)].

Structural commentary

The oxalate anion chelates the [SnCl3(H2O)]+ moiety and completes a distorted octa­hedral environment around the tin(IV) atom in the anion (Fig. 1 ▸). The Sn—Cl distances [2.359 (2)–2.378 (3) Å] and the Sn—O distances [2.097 (6) Å and 2.111 (6) Å] are similar to those reported for the same anion in ((H3C)4N)[Sn(H2O)Cl3(C2O4)] (Sow et al., 2013 ▸). The pairwise distribution of C—O bond lengths with two shorter [1.235 (12)/1.243 (12) Å for O3/O4] and two longer bonds [1.277 (11)/1.282 (12) Å for O1/O2] is attributed to additional bonding to the SnIV atom for the longer bonds. The water mol­ecule is trans to one of the Cl atoms and the Sn—O5 bond linking the water mol­ecule to the tin(IV) atom [2.124 (7) Å] is slightly longer than the Sn—O bonds involving the oxalate O atoms. The angles in the [Sn(H2O)Cl3(C2O4)]− anion and in the organic cation have typical values.
Figure 1

The mol­ecular components of the title compound, with atom labels and 50% displacement ellipsoids at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Supra­molecular features

Each complex [Sn(H2O)Cl3(C2O4)]− anion is linked with two other anions through O—H⋯O hydrogen bonds between the water mol­ecules as donor and non-coordinating oxalate O atoms as acceptor groups (Table 1 ▸). The cations are connected to the anions through a bifurcated N—H⋯O hydrogen bond. Additional N—H⋯Cl hydrogen bonding between cations and anions stabilizes this three-dimensional arrangement (Table 1 ▸, Fig. 2 ▸). Topological analysis according to TOPOS (Alexandrov et al., 2011 ▸) reveals a net with 3,5T1 topological type (Fig. 3 ▸).
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O5H5AO4i 0.871.762.618(9)170
O5H5BO3ii 0.871.832.602(9)146
N1H1O30.882.323.010(11)136
N1H1O40.882.312.974(10)132
N2H2Cl2iii 0.882.703.354(8)132
N2H2Cl1iv 0.882.843.435(10)126

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 2

View approximately around the b axis showing a central complex anion acting as a hydrogen-bond donor toward two other anions and as a hydrogen-bond acceptor of three methyl-2-imidazolium cations.

Figure 3

The 3,5T1 topological network in the structure of the title compound. The purple nodes correspond to the SnIV atoms while the blue nodes are the centres of the organic cations.

Database Survey

A search of the Cambridge Structural Database (Version 5.36 with one update, Groom & Allen, 2014 ▸) returned about 50 different structures with bidentate oxalate anions linked to a SnIV atom, from which 23 have their oxalate anions acting as bridging ligands, while 20 have the same configuration as in the title compound with a pairwise distribution of C—O bond lengths. Four structures include both configurations, see, for example: Gueye et al. (2010 ▸) or Ng et al. (1992 ▸).

Synthesis and crystallization

Crystals of methyl-2-imidazolium hydrogenoxalate dihydrate (L) were obtained by mixing methyl-2-imidazole with oxalic acid in a 1:1 ratio in water and evaporation of the solvent at 333 K. On allowing (L) to react with SnCl2·2H2O in a 1:2 ratio in methanol, crystals of (C4H7N2)+[Sn(H2O)Cl3(C2O4)]− were obtained after slow solvent evaporation at room temperature.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms of the water mol­ecules were obtained from a difference map and were refined with an O—H distance of 0.87 Å and U iso(H) = 1.5U eq(O). The other H atoms were positioned geometrically (C—H = 0.95 for aromatic and 0.98 Å for methyl groups; N—H = 0.88 Å) and refined as riding with U iso(H) = xU eq(C,N) with x = 1.5 for methyl and x = 1.2 for all other H atoms.
Table 2

Experimental details

Crystal data
Chemical formula(C4H7N2)[Sn(C2O4)Cl3(H2O)]
M r 414.19
Crystal system, space groupTriclinic, P
Temperature (K)120
a, b, c ()7.4757(9), 8.0857(10), 11.2846(14)
, , ()80.856(8), 83.946(9), 86.587(8)
V (3)669.05(14)
Z 2
Radiation typeGa K, = 1.34139
(mm1)13.92
Crystal size (mm)0.05 0.04 0.04
 
Data collection
DiffractometerBruker Venture Metaljet
Absorption correctionMulti-scan (SADABS; Krause et al., 2015)
T min, T max 0.133, 0.255
No. of measured, independent and observed [I > 2(I)] reflections5497, 2520, 1604
R int 0.112
(sin /)max (1)0.619
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.062, 0.150, 1.07
No. of reflections2520
No. of parameters156
H-atom treatmentH-atom parameters constrained
max, min (e 3)2.10, 1.23

Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015005988/wm5136sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015005988/wm5136Isup2.hkl CCDC reference: 1056053 Additional supporting information: crystallographic information; 3D view; checkCIF report
(C4H7N2)[Sn(C2O4)Cl3(H2O)]Z = 2
Mr = 414.19F(000) = 400
Triclinic, P1Dx = 2.056 Mg m3
a = 7.4757 (9) ÅGa Kα radiation, λ = 1.34139 Å
b = 8.0857 (10) ÅCell parameters from 2537 reflections
c = 11.2846 (14) Åθ = 3.5–53.3°
α = 80.856 (8)°µ = 13.92 mm1
β = 83.946 (9)°T = 120 K
γ = 86.587 (8)°Block, clear light colourless
V = 669.05 (14) Å30.05 × 0.04 × 0.04 mm
Bruker Venture Metaljet diffractometer2520 independent reflections
Radiation source: Metal Jet, Gallium Liquid Metal Jet Source1604 reflections with I > 2σ(I)
Helios MX Mirror Optics monochromatorRint = 0.112
Detector resolution: 10.24 pixels mm-1θmax = 56.1°, θmin = 4.8°
ω and φ scansh = −8→9
Absorption correction: multi-scan (SADABS; Krause et al., 2015)k = −9→9
Tmin = 0.133, Tmax = 0.255l = −12→13
5497 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.062H-atom parameters constrained
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0517P)2 + 1.7851P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2520 reflectionsΔρmax = 2.10 e Å3
156 parametersΔρmin = −1.23 e Å3
0 restraints
Experimental. X-ray crystallographic data for I were collected from a single-crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Venture diffractometer equipped with a Photon 100 CMOS Detector, a Helios MX optics and a Kappa goniometer. The crystal-to-detector distance was 4.0 cm, and the data collection was carried out in 1024 x 1024 pixel mode.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Sn10.29887 (9)0.93269 (8)0.27360 (5)0.0317 (2)
Cl20.0743 (4)1.0116 (3)0.1403 (2)0.0435 (6)
Cl30.3305 (4)0.6485 (3)0.2412 (2)0.0440 (6)
Cl10.5565 (3)1.0303 (3)0.1490 (2)0.0408 (6)
O10.4545 (9)0.8696 (8)0.4197 (5)0.0350 (16)
O50.2658 (9)1.1790 (8)0.3182 (6)0.0353 (16)
H5A0.35901.20420.35070.053*
H5B0.17141.18660.36930.053*
O30.0676 (9)0.7477 (9)0.6101 (6)0.0382 (16)
O20.0984 (9)0.8685 (8)0.4173 (5)0.0346 (15)
O40.4338 (9)0.7392 (9)0.6108 (6)0.0384 (17)
N10.2275 (12)0.5715 (10)0.8327 (7)0.042 (2)
H10.22880.65850.77490.050*
C10.3663 (13)0.8049 (12)0.5176 (9)0.035 (2)
C50.2088 (13)0.4176 (12)0.8164 (9)0.034 (2)
C20.1599 (14)0.8079 (13)0.5178 (9)0.038 (2)
N20.2132 (12)0.3254 (11)0.9248 (7)0.046 (2)
H20.20190.21620.93990.055*
C30.2380 (15)0.4238 (12)1.0101 (9)0.041 (3)
H30.24810.38741.09350.050*
C40.2450 (16)0.5808 (14)0.9517 (9)0.044 (3)
H40.25920.67910.98540.053*
C60.1870 (14)0.3569 (13)0.7014 (9)0.040 (2)
H6A0.06800.39390.67570.060*
H6B0.19820.23420.71340.060*
H6C0.28040.40260.63930.060*
U11U22U33U12U13U23
Sn10.0409 (4)0.0320 (4)0.0223 (4)−0.0033 (3)−0.0078 (2)−0.0003 (3)
Cl20.0552 (15)0.0464 (15)0.0291 (13)−0.0117 (12)−0.0202 (11)0.0076 (12)
Cl30.0584 (15)0.0350 (14)0.0407 (14)−0.0062 (12)−0.0077 (12)−0.0090 (12)
Cl10.0482 (13)0.0417 (14)0.0302 (12)−0.0063 (11)0.0016 (11)−0.0003 (11)
O10.049 (4)0.037 (4)0.020 (3)−0.012 (3)−0.010 (3)0.004 (3)
O50.038 (4)0.039 (4)0.029 (4)−0.006 (3)−0.003 (3)−0.005 (3)
O30.037 (4)0.042 (4)0.029 (4)0.002 (3)−0.001 (3)0.014 (3)
O20.049 (4)0.034 (4)0.021 (3)0.005 (3)−0.005 (3)−0.004 (3)
O40.041 (4)0.042 (4)0.031 (4)−0.007 (3)−0.020 (3)0.012 (3)
N10.061 (6)0.029 (5)0.033 (5)−0.013 (4)−0.011 (4)0.010 (4)
C10.046 (6)0.030 (5)0.033 (6)−0.018 (5)0.005 (5)−0.010 (5)
C50.038 (5)0.033 (5)0.032 (5)−0.003 (4)−0.005 (4)−0.003 (5)
C20.048 (6)0.031 (6)0.037 (6)0.002 (5)−0.012 (5)−0.005 (5)
N20.066 (6)0.032 (5)0.035 (5)0.000 (4)0.002 (4)0.003 (4)
C30.072 (7)0.025 (5)0.026 (5)0.004 (5)−0.012 (5)0.003 (5)
C40.068 (7)0.035 (6)0.031 (6)−0.011 (5)−0.005 (5)−0.007 (5)
C60.049 (6)0.038 (6)0.035 (6)0.001 (5)−0.012 (5)−0.004 (5)
Sn1—Cl22.364 (3)N1—C51.304 (13)
Sn1—Cl32.378 (3)N1—C41.377 (12)
Sn1—Cl12.359 (2)C1—C21.542 (14)
Sn1—O12.097 (6)C5—N21.330 (12)
Sn1—O52.124 (7)C5—C61.486 (13)
Sn1—O22.111 (6)N2—H20.8800
O1—C11.277 (11)N2—C31.375 (12)
O5—H5A0.8700C3—H30.9500
O5—H5B0.8691C3—C41.336 (14)
O3—C21.235 (12)C4—H40.9500
O2—C21.282 (12)C6—H6A0.9800
O4—C11.243 (12)C6—H6B0.9800
N1—H10.8800C6—H6C0.9800
Cl2—Sn1—Cl395.47 (10)O4—C1—O1125.3 (9)
Cl1—Sn1—Cl2100.40 (9)O4—C1—C2118.3 (8)
Cl1—Sn1—Cl397.56 (9)N1—C5—N2105.5 (8)
O1—Sn1—Cl2168.07 (19)N1—C5—C6127.6 (9)
O1—Sn1—Cl388.82 (19)N2—C5—C6126.9 (9)
O1—Sn1—Cl190.03 (18)O3—C2—O2125.0 (10)
O1—Sn1—O587.8 (3)O3—C2—C1119.3 (9)
O1—Sn1—O278.6 (3)O2—C2—C1115.6 (9)
O5—Sn1—Cl287.18 (19)C5—N2—H2124.6
O5—Sn1—Cl3175.21 (18)C5—N2—C3110.9 (8)
O5—Sn1—Cl185.86 (18)C3—N2—H2124.6
O2—Sn1—Cl290.23 (19)N2—C3—H3127.0
O2—Sn1—Cl390.25 (19)C4—C3—N2106.0 (9)
O2—Sn1—Cl1166.09 (18)C4—C3—H3127.0
O2—Sn1—O585.7 (2)N1—C4—H4126.9
C1—O1—Sn1114.2 (6)C3—C4—N1106.1 (10)
Sn1—O5—H5A110.8C3—C4—H4126.9
Sn1—O5—H5B110.3C5—C6—H6A109.5
H5A—O5—H5B108.2C5—C6—H6B109.5
C2—O2—Sn1114.3 (6)C5—C6—H6C109.5
C5—N1—H1124.2H6A—C6—H6B109.5
C5—N1—C4111.5 (9)H6A—C6—H6C109.5
C4—N1—H1124.2H6B—C6—H6C109.5
O1—C1—C2116.5 (9)
Sn1—O1—C1—O4170.5 (8)N1—C5—N2—C3−0.9 (12)
Sn1—O1—C1—C2−8.7 (10)C5—N1—C4—C30.6 (13)
Sn1—O2—C2—O3−172.8 (8)C5—N2—C3—C41.3 (13)
Sn1—O2—C2—C14.3 (10)N2—C3—C4—N1−1.1 (13)
O1—C1—C2—O3−179.7 (8)C4—N1—C5—N20.2 (12)
O1—C1—C2—O23.0 (13)C4—N1—C5—C6−179.8 (10)
O4—C1—C2—O31.1 (14)C6—C5—N2—C3179.1 (10)
O4—C1—C2—O2−176.2 (8)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O4i0.871.762.618 (9)170
O5—H5B···O3ii0.871.832.602 (9)146
N1—H1···O30.882.323.010 (11)136
N1—H1···O40.882.312.974 (10)132
N2—H2···Cl2iii0.882.703.354 (8)132
N2—H2···Cl1iv0.882.843.435 (10)126
  9 in total

1.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

2.  Bis(dicyclo-hexyl-ammonium) μ-oxalato-κO,O:O,O-bis-[aqua-(oxalato-κO,O)diphenyl-stannate(IV)].

Authors:  Ndongo Gueye; Libasse Diop; K C Kieran Molloy; Gabrielle Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24

3.  Dibenzyl-aza-nium (oxalato-κ(2)O,O')triphenyl-stannate(IV).

Authors:  Ndongo Gueye; Libasse Diop; Kieran C Molloy; Gabrielle Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

4.  Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination.

Authors:  Lennard Krause; Regine Herbst-Irmer; George M Sheldrick; Dietmar Stalke
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

5.  Tetra-kis(di-propyl-ammonium) tetra-kis(oxa-lato-κ(2) O (1),O (2))stannate(IV) mono-hydrate: a complex with an eight-coordinate Sn(IV) atom.

Authors:  Ndongo Gueye; Libasse Diop; Helen Stoeckli-Evans
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-18

6.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  μ(2)-Oxalato-bis-[triphen-yl(thio-urea-κS)tin(IV)].

Authors:  Yaya Sow; Libasse Diop; Kieran C Molloy; Gabrielle Kociok-Kohn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

9.  Tetra-methyl-ammonium aqua-trichlorido-oxalatostannate(IV) monohydrate.

Authors:  Yaya Sow; Libasse Diop; Kieran C Molloy; Gabriele Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-16
  9 in total
  3 in total

1.  Crystal structure of 2-methyl-1H-imidazol-3-ium hydrogen oxalate dihydrate.

Authors:  Mouhamadou Birame Diop; Libasse Diop; Laurent Plasseraud; Hélène Cattey
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-07-12

2.  Crystal structure of bis-(2-methyl-1H-imidazol-3-ium) μ-oxalato-bis-[n-butyl-tri-chlorido-stannate(IV)].

Authors:  Mouhamadou Birame Diop; Libasse Diop; Allen G Oliver
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-05-27

3.  Crystal structure of bis-(2-methyl-1H-imidazol-3-ium) di-hydroxidobis(oxalato-κ(2) O (1),O (2))stannate(IV) monohydrate.

Authors:  Mouhamadou Birame Diop; Libasse Diop; Laurent Plasseraud; Thierry Maris
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-17
  3 in total

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