Literature DB >> 23284328

μ(2)-Oxalato-bis-[triphen-yl(thio-urea-κS)tin(IV)].

Yaya Sow1, Libasse Diop, Kieran C Molloy, Gabrielle Kociok-Kohn.   

Abstract

The asymmetric unit of the binuclear title compound, [Sn(2)(C(2)O(4))(C(6)H(5))(6)(CH(4)N(2)S)(2)], consists of one half of the organotin(IV) mol-ecule. The remainder is generated by a twofold rotation axis passing through the mid-point of the oxalate C-C bond. The Sn(IV) atom exhibits a distorted trigonal-bipyramidal coordination environment with the phenyl groups in equatorial positions and the thio-urea and the monodentately bridging oxalate anion in axial positions. The mol-ecules are linked through N-H⋯O hydrogen bonds involving the amino group of the thio-urea ligand and the uncoordinating oxalate O atoms, forming layers parallel to (001). Weak C-H⋯O inter-actions are also present.

Entities:  

Year:  2012        PMID: 23284328      PMCID: PMC3515101          DOI: 10.1107/S1600536812040706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to organotin(IV) chemistry, see: Evans & Karpel (1985 ▶); Gielen et al. (1995 ▶). For triphenyl­tin(IV)-containing compounds and their biological activity, see: Kamruddin et al. (1996 ▶). For related compounds, see: Diallo et al. (2009 ▶); Diasse-Sarr et al. (1997 ▶); Diop et al. (1997 ▶, 1999 ▶, 2003 ▶); Tiekink (1992 ▶).

Experimental

Crystal data

[Sn2(C2O4)(C6H5)6(CH4N2S)2] M = 940.24 Monoclinic, a = 12.9161 (2) Å b = 13.9870 (2) Å c = 21.8215 (3) Å β = 99.238 (1)° V = 3891.09 (10) Å3 Z = 4 Mo Kα radiation μ = 1.44 mm−1 T = 150 K 0.30 × 0.30 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.659, T max = 0.747 31403 measured reflections 4472 independent reflections 3665 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.066 S = 1.09 4472 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.34 e Å−3 Δρmin = −1.11 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia,1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536812040706/wm2662sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040706/wm2662Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn2(C2O4)(C6H5)6(CH4N2S)2]F(000) = 1880
Mr = 940.24Dx = 1.605 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 26977 reflections
a = 12.9161 (2) Åθ = 2.9–27.5°
b = 13.9870 (2) ŵ = 1.44 mm1
c = 21.8215 (3) ÅT = 150 K
β = 99.238 (1)°Block, colourless
V = 3891.09 (10) Å30.30 × 0.30 × 0.20 mm
Z = 4
Nonius KappaCCD diffractometer4472 independent reflections
Radiation source: fine-focus sealed tube3665 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.057
400 1.5 degree images with φ and ω scansθmax = 27.5°, θmin = 3.8°
Absorption correction: multi-scan (SORTAV; Blessing, 1995)h = −16→16
Tmin = 0.659, Tmax = 0.747k = −18→18
31403 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.066H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0248P)2 + 7.4801P] where P = (Fo2 + 2Fc2)/3
4472 reflections(Δ/σ)max = 0.001
251 parametersΔρmax = 1.34 e Å3
0 restraintsΔρmin = −1.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn0.165377 (13)0.128741 (12)0.141781 (7)0.01783 (7)
S0.33347 (5)0.18709 (5)0.09290 (3)0.02648 (16)
O10.03210 (13)0.08111 (13)0.18919 (8)0.0223 (4)
O20.09855 (14)−0.05868 (13)0.22806 (8)0.0247 (4)
N10.3214 (2)0.34372 (19)0.16116 (13)0.0319 (6)
H1A0.340 (3)0.385 (3)0.1866 (18)0.050 (12)*
H1B0.256 (3)0.351 (2)0.1449 (16)0.040 (10)*
N20.4815 (2)0.2725 (2)0.17068 (13)0.0342 (6)
H2A0.509 (3)0.319 (3)0.1931 (16)0.044 (10)*
H2B0.519 (3)0.228 (3)0.1620 (17)0.050 (12)*
C10.07308 (19)0.25438 (17)0.11628 (11)0.0190 (5)
C20.0815 (2)0.30357 (19)0.06162 (12)0.0245 (6)
H20.13630.28760.03920.029*
C30.0110 (2)0.3755 (2)0.03950 (14)0.0308 (6)
H30.01810.40820.00230.037*
C4−0.0697 (2)0.3998 (2)0.07159 (14)0.0317 (7)
H4−0.11870.44800.05600.038*
C5−0.0780 (2)0.35315 (19)0.12646 (13)0.0266 (6)
H5−0.13230.37020.14910.032*
C6−0.0075 (2)0.28136 (19)0.14865 (12)0.0229 (6)
H6−0.01400.25000.18650.027*
C70.2578 (2)0.11799 (18)0.23207 (12)0.0215 (5)
C80.2292 (2)0.1691 (3)0.28081 (13)0.0410 (8)
H80.17520.21570.27240.049*
C90.2764 (3)0.1547 (4)0.34114 (15)0.0574 (11)
H90.25490.19130.37350.069*
C100.3516 (3)0.0900 (3)0.35449 (15)0.0576 (12)
H100.38300.07970.39640.069*
C110.3848 (4)0.0368 (3)0.3069 (2)0.0700 (14)
H110.4388−0.00950.31620.084*
C120.3373 (3)0.0529 (2)0.24521 (16)0.0515 (10)
H120.36050.01840.21250.062*
C130.15172 (19)0.01853 (18)0.07300 (11)0.0202 (5)
C140.1501 (2)0.0447 (2)0.01093 (12)0.0298 (6)
H140.15580.11020.00040.036*
C150.1403 (2)−0.0245 (2)−0.03532 (13)0.0360 (7)
H150.1396−0.0062−0.07730.043*
C160.1317 (2)−0.1194 (2)−0.02054 (14)0.0333 (7)
H160.1249−0.1665−0.05230.040*
C170.1328 (2)−0.1461 (2)0.04042 (14)0.0343 (7)
H170.1266−0.21170.05060.041*
C180.1429 (2)−0.0774 (2)0.08685 (12)0.0270 (6)
H180.1438−0.09640.12870.032*
C190.03827 (19)0.01088 (18)0.22640 (11)0.0190 (5)
C200.3813 (2)0.2744 (2)0.14526 (12)0.0260 (6)
U11U22U33U12U13U23
Sn0.02036 (10)0.01769 (10)0.01559 (9)0.00087 (7)0.00337 (6)−0.00049 (7)
S0.0272 (3)0.0299 (4)0.0242 (3)−0.0054 (3)0.0098 (3)−0.0070 (3)
O10.0227 (9)0.0238 (10)0.0211 (9)0.0002 (8)0.0056 (7)0.0060 (8)
O20.0294 (10)0.0208 (10)0.0254 (10)0.0042 (8)0.0093 (8)0.0000 (8)
N10.0311 (15)0.0292 (14)0.0346 (14)−0.0033 (12)0.0029 (11)−0.0081 (12)
N20.0297 (14)0.0301 (15)0.0427 (16)−0.0074 (13)0.0057 (12)−0.0087 (13)
C10.0217 (13)0.0153 (12)0.0193 (12)−0.0001 (10)0.0011 (10)0.0000 (10)
C20.0277 (14)0.0250 (14)0.0208 (13)0.0001 (11)0.0039 (11)0.0013 (11)
C30.0364 (16)0.0237 (15)0.0309 (15)0.0021 (13)0.0015 (12)0.0069 (12)
C40.0295 (15)0.0247 (15)0.0389 (17)0.0063 (12)−0.0006 (12)0.0012 (13)
C50.0222 (14)0.0216 (14)0.0358 (15)0.0014 (11)0.0046 (11)−0.0065 (12)
C60.0255 (14)0.0197 (13)0.0240 (13)−0.0012 (11)0.0054 (10)−0.0013 (11)
C70.0205 (12)0.0232 (14)0.0201 (12)−0.0027 (11)0.0015 (10)0.0026 (11)
C80.0254 (15)0.072 (2)0.0251 (15)0.0055 (16)0.0021 (12)−0.0117 (15)
C90.0331 (18)0.117 (4)0.0207 (16)−0.010 (2)0.0009 (13)−0.0065 (19)
C100.069 (3)0.075 (3)0.0207 (16)−0.046 (2)−0.0189 (16)0.0201 (17)
C110.077 (3)0.037 (2)0.077 (3)0.012 (2)−0.045 (2)0.006 (2)
C120.062 (2)0.039 (2)0.044 (2)0.0230 (18)−0.0196 (17)−0.0121 (16)
C130.0170 (12)0.0228 (14)0.0202 (12)0.0005 (10)0.0017 (10)−0.0059 (10)
C140.0387 (17)0.0275 (15)0.0224 (14)0.0005 (13)0.0024 (12)−0.0017 (11)
C150.0424 (18)0.046 (2)0.0187 (14)−0.0021 (15)0.0026 (12)−0.0073 (13)
C160.0330 (16)0.0374 (18)0.0292 (15)−0.0032 (14)0.0036 (12)−0.0176 (13)
C170.0414 (17)0.0265 (16)0.0350 (16)−0.0030 (13)0.0064 (13)−0.0084 (13)
C180.0292 (14)0.0288 (15)0.0234 (14)−0.0015 (12)0.0051 (11)−0.0032 (12)
C190.0217 (13)0.0192 (13)0.0164 (12)−0.0032 (11)0.0042 (10)−0.0016 (10)
C200.0303 (15)0.0252 (14)0.0241 (14)−0.0062 (12)0.0095 (11)0.0012 (11)
Sn—C72.139 (2)C6—H60.9500
Sn—C132.139 (2)C7—C121.368 (4)
Sn—C12.146 (2)C7—C81.381 (4)
Sn—O12.2471 (17)C8—C91.374 (4)
Sn—S2.6945 (7)C8—H80.9500
S—C201.718 (3)C9—C101.325 (6)
O1—C191.269 (3)C9—H90.9500
O2—C191.243 (3)C10—C111.398 (6)
N1—C201.321 (4)C10—H100.9500
N1—H1A0.81 (4)C11—C121.406 (5)
N1—H1B0.86 (4)C11—H110.9500
N2—C201.324 (4)C12—H120.9500
N2—H2A0.85 (4)C13—C181.384 (4)
N2—H2B0.82 (4)C13—C141.400 (4)
C1—C21.396 (3)C14—C151.389 (4)
C1—C61.400 (4)C14—H140.9500
C2—C31.391 (4)C15—C161.375 (4)
C2—H20.9500C15—H150.9500
C3—C41.388 (4)C16—C171.380 (4)
C3—H30.9500C16—H160.9500
C4—C51.383 (4)C17—C181.388 (4)
C4—H40.9500C17—H170.9500
C5—C61.390 (4)C18—H180.9500
C5—H50.9500C19—C19i1.538 (5)
C7—Sn—C13124.52 (10)C9—C8—C7122.0 (3)
C7—Sn—C1120.08 (9)C9—C8—H8119.0
C13—Sn—C1115.36 (9)C7—C8—H8119.0
C7—Sn—O184.87 (8)C10—C9—C8120.5 (4)
C13—Sn—O197.26 (8)C10—C9—H9119.7
C1—Sn—O185.84 (8)C8—C9—H9119.7
C7—Sn—S91.14 (7)C9—C10—C11120.1 (3)
C13—Sn—S85.49 (7)C9—C10—H10120.0
C1—Sn—S95.66 (7)C11—C10—H10120.0
O1—Sn—S175.97 (5)C10—C11—C12119.2 (3)
C20—S—Sn100.29 (9)C10—C11—H11120.4
C19—O1—Sn123.37 (16)C12—C11—H11120.4
C20—N1—H1A126 (3)C7—C12—C11120.3 (3)
C20—N1—H1B123 (2)C7—C12—H12119.8
H1A—N1—H1B111 (3)C11—C12—H12119.8
C20—N2—H2A121 (2)C18—C13—C14118.4 (2)
C20—N2—H2B119 (3)C18—C13—Sn123.08 (19)
H2A—N2—H2B120 (3)C14—C13—Sn118.5 (2)
C2—C1—C6117.7 (2)C15—C14—C13120.4 (3)
C2—C1—Sn120.59 (19)C15—C14—H14119.8
C6—C1—Sn121.12 (18)C13—C14—H14119.8
C3—C2—C1121.1 (3)C16—C15—C14120.2 (3)
C3—C2—H2119.4C16—C15—H15119.9
C1—C2—H2119.4C14—C15—H15119.9
C4—C3—C2120.3 (3)C15—C16—C17120.0 (3)
C4—C3—H3119.8C15—C16—H16120.0
C2—C3—H3119.8C17—C16—H16120.0
C5—C4—C3119.4 (3)C16—C17—C18120.1 (3)
C5—C4—H4120.3C16—C17—H17120.0
C3—C4—H4120.3C18—C17—H17120.0
C4—C5—C6120.3 (3)C13—C18—C17120.9 (3)
C4—C5—H5119.9C13—C18—H18119.5
C6—C5—H5119.9C17—C18—H18119.5
C5—C6—C1121.2 (3)O2—C19—O1126.8 (2)
C5—C6—H6119.4O2—C19—C19i116.57 (17)
C1—C6—H6119.4O1—C19—C19i116.58 (18)
C12—C7—C8117.9 (3)N1—C20—N2118.6 (3)
C12—C7—Sn121.9 (2)N1—C20—S122.2 (2)
C8—C7—Sn119.6 (2)N2—C20—S119.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2ii0.81 (4)2.06 (4)2.824 (3)157 (4)
N2—H2A···O2iii0.86 (4)2.14 (4)2.970 (3)164 (3)
C6—H6···O10.952.442.957 (3)114
C18—H18···O20.952.393.234 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.81 (4)2.06 (4)2.824 (3)157 (4)
N2—H2A⋯O2ii 0.86 (4)2.14 (4)2.970 (3)164 (3)
C6—H6⋯O10.952.442.957 (3)114
C18—H18⋯O20.952.393.234 (3)147

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

  2 in total
  5 in total

1.  Crystal structure of 2-methyl-1H-imidazol-3-ium aqua-tri-chlorido-(oxalato-κ(2) O,O')stannate(IV).

Authors:  Mouhamadou Birame Diop; Libasse Diop; Laurent Plasseraud; Thierry Maris
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-22

2.  Di-chlorido-dimethyl-bis-(thio-urea-κS)tin(IV).

Authors:  Yaya Sow; Libasse Diop; Manuel A Fernandes; Helen Stoeckli-Evans
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-08

3.  Crystal structure of μ-oxalato-κ2O1:O2-bis-[(dimethyl sulfoxide-κO)tri-phenyl-tin(IV)].

Authors:  Serigne Fallou Pouye; Ibrahima Cisse; Libasse Diop; Alessandro Dolmella; Sylvain Bernès
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-06-13

4.  Synthesis, structure determination and characterization by UV-Vis and IR spectroscopy of bis-(diiso-propyl-ammonium) cis-di-chlorido-bis(oxalato-κ2 O 1,O 2)stannate(IV).

Authors:  Bougar Sarr; Abdou Mbaye; Cheikh Abdoul Khadir Diop; Mamadou Sidibe; Yoann Rousselin
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-03

5.  Di-chlorido-diphenyl-bis-(thio-urea-κS)tin(IV).

Authors:  Yaya Sow; Libasse Diop; Kieran C Molloy; Gabriele Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-12
  5 in total

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