Literature DB >> 25991529

Freeze-thaw cycles as drivers of complex ribozyme assembly.

Hannes Mutschler1, Aniela Wochner1, Philipp Holliger1.   

Abstract

The emergence of an RNA catalyst capable of self-replication is considered a key transition in the origin of life. However, how such replicase ribozymes emerged from the pools of short RNA oligomers arising from prebiotic chemistry and non-enzymatic replication is unclear. Here we show that RNA polymerase ribozymes can assemble from simple catalytic networks of RNA oligomers no longer than 30 nucleotides. The entropically disfavoured assembly reaction is driven by iterative freeze-thaw cycles, even in the absence of external activation chemistry. The steep temperature and concentration gradients of such cycles result in an RNA chaperone effect that enhances the otherwise only partially realized catalytic potential of the RNA oligomer pool by an order of magnitude. Our work outlines how cyclic physicochemical processes could have driven an expansion of RNA compositional and phenotypic complexity from simple oligomer pools.

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Year:  2015        PMID: 25991529      PMCID: PMC4495579          DOI: 10.1038/nchem.2251

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  47 in total

1.  A conformational change in the "loop E-like" motif of the hairpin ribozyme is coincidental with domain docking and is essential for catalysis.

Authors:  K J Hampel; J M Burke
Journal:  Biochemistry       Date:  2001-03-27       Impact factor: 3.162

2.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

3.  Correlating structural dynamics and function in single ribozyme molecules.

Authors:  Xiaowei Zhuang; Harold Kim; Miguel J B Pereira; Hazen P Babcock; Nils G Walter; Steven Chu
Journal:  Science       Date:  2002-05-24       Impact factor: 47.728

4.  Generalized RNA-directed recombination of RNA.

Authors:  Craig A Riley; Niles Lehman
Journal:  Chem Biol       Date:  2003-12

5.  Salt-promoted synthesis of RNA-like molecules in simulated hydrothermal conditions.

Authors:  Laura Da Silva; Marie-Christine Maurel; David Deamer
Journal:  J Mol Evol       Date:  2014-12-09       Impact factor: 2.395

6.  Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length.

Authors:  Moritz Kreysing; Lorenz Keil; Simon Lanzmich; Dieter Braun
Journal:  Nat Chem       Date:  2015-01-26       Impact factor: 24.427

7.  Eutectic phase polymerization of activated ribonucleotide mixtures yields quasi-equimolar incorporation of purine and pyrimidine nucleobases.

Authors:  Pierre-Alain Monnard; Anastassia Kanavarioti; David W Deamer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

8.  Perturbation of protein tertiary structure in frozen solutions revealed by 1-anilino-8-naphthalene sulfonate fluorescence.

Authors:  Edi Gabellieri; Giovanni B Strambini
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

9.  A cross-chiral RNA polymerase ribozyme.

Authors:  Jonathan T Sczepanski; Gerald F Joyce
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

10.  Non-canonical 3'-5' extension of RNA with prebiotically plausible ribonucleoside 2',3'-cyclic phosphates.

Authors:  Hannes Mutschler; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2014-03-28       Impact factor: 15.419

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  42 in total

1.  An RNA polymerase ribozyme that synthesizes its own ancestor.

Authors:  Katrina F Tjhung; Maxim N Shokhirev; David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-27       Impact factor: 11.205

2.  Encapsulation of Nucleic Acids into Giant Unilamellar Vesicles by Freeze-Thaw: a Way Protocells May Form.

Authors:  Hai Qiao; Na Hu; Jin Bai; Lili Ren; Qing Liu; Liaoqiong Fang; Zhibiao Wang
Journal:  Orig Life Evol Biosph       Date:  2016-11-02       Impact factor: 1.950

3.  Mineral surfaces select for longer RNA molecules.

Authors:  Ryo Mizuuchi; Alex Blokhuis; Lena Vincent; Philippe Nghe; Niles Lehman; David Baum
Journal:  Chem Commun (Camb)       Date:  2019-02-12       Impact factor: 6.222

4.  Oligomerization of a Bimolecular Ribozyme Modestly Rescues its Structural Defects that Disturb Interdomain Assembly to Form the Catalytic Site.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2018-08-14       Impact factor: 2.395

5.  Dynamics of prebiotic RNA reproduction illuminated by chemical game theory.

Authors:  Jessica A M Yeates; Christian Hilbe; Martin Zwick; Martin A Nowak; Niles Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

6.  Ligation of RNA Oligomers by the Schistosoma mansoni Hammerhead Ribozyme in Frozen Solution.

Authors:  Lively Lie; Shweta Biliya; Fredrik Vannberg; Roger M Wartell
Journal:  J Mol Evol       Date:  2016-02-20       Impact factor: 2.395

Review 7.  Sex in a test tube: testing the benefits of in vitro recombination.

Authors:  Diego Pesce; Niles Lehman; J Arjan G M de Visser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

8.  Generation of RNA with 2', 3'-Cyclic Phosphates by Deoxyribozyme Cleavage in Frozen Solutions.

Authors:  Kristian K Le Vay; Hannes Mutschler
Journal:  Methods Mol Biol       Date:  2022

9.  Models of Replicator Proliferation Involving Differential Replicator Subunit Stability.

Authors:  Zewei Li; Runhe Lyu; John Tower
Journal:  Orig Life Evol Biosph       Date:  2018-09-10       Impact factor: 1.950

10.  Sulfidic Anion Concentrations on Early Earth for Surficial Origins-of-Life Chemistry.

Authors:  Sukrit Ranjan; Zoe R Todd; John D Sutherland; Dimitar D Sasselov
Journal:  Astrobiology       Date:  2018-04-08       Impact factor: 4.335

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