Literature DB >> 27619693

Sex in a test tube: testing the benefits of in vitro recombination.

Diego Pesce1, Niles Lehman2, J Arjan G M de Visser3.   

Abstract

The origin and evolution of sex, and the associated role of recombination, present a major problem in biology. Sex typically involves recombination of closely related DNA or RNA sequences, which is fundamentally a random process that creates but also breaks up beneficial allele combinations. Directed evolution experiments, which combine in vitro mutation and recombination protocols with in vitro or in vivo selection, have proved to be an effective approach for improving functionality of nucleic acids and enzymes. As this approach allows extreme control over evolutionary conditions and parameters, it also facilitates the detection of small or position-specific recombination benefits and benefits associated with recombination between highly divergent genotypes. Yet, in vitro approaches have been largely exploratory and motivated by obtaining improved end products rather than testing hypotheses of recombination benefits. Here, we review the various experimental systems and approaches used by in vitro studies of recombination, discuss what they say about the evolutionary role of recombination, and sketch their potential for addressing extant questions about the evolutionary role of sex and recombination, in particular on complex fitness landscapes. We also review recent insights into the role of 'extracellular recombination' during the origin of life.This article is part of the themed issue 'Weird sex: the underappreciated diversity of sexual reproduction'.
© 2016 The Author(s).

Keywords:  evolution of sex; fitness landscape; in vitro recombination; laboratory directed evolution; origin of life

Mesh:

Year:  2016        PMID: 27619693      PMCID: PMC5031614          DOI: 10.1098/rstb.2015.0529

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  89 in total

1.  Sex increases the efficacy of natural selection in experimental yeast populations.

Authors:  Matthew R Goddard; H Charles J Godfray; Austin Burt
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

Review 2.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  The low cost of recombination in creating novel phenotypes: Recombination can create new phenotypes while disrupting well-adapted phenotypes much less than mutation.

Authors:  Andreas Wagner
Journal:  Bioessays       Date:  2011-06-01       Impact factor: 4.345

4.  Ribozyme-catalyzed transcription of an active ribozyme.

Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

Review 5.  Population genetic perspectives on the evolution of recombination.

Authors:  M W Feldman; S P Otto; F B Christiansen
Journal:  Annu Rev Genet       Date:  1996       Impact factor: 16.830

6.  Molecular evolution by staggered extension process (StEP) in vitro recombination.

Authors:  H Zhao; L Giver; Z Shao; J A Affholter; F H Arnold
Journal:  Nat Biotechnol       Date:  1998-03       Impact factor: 54.908

7.  Sex speeds adaptation by altering the dynamics of molecular evolution.

Authors:  Michael J McDonald; Daniel P Rice; Michael M Desai
Journal:  Nature       Date:  2016-02-24       Impact factor: 49.962

8.  Expression, purification, and characterization of SARS coronavirus RNA polymerase.

Authors:  Ao Cheng; Wei Zhang; Youhua Xie; Weihong Jiang; Eddy Arnold; Stefan G Sarafianos; Jianping Ding
Journal:  Virology       Date:  2005-05-10       Impact factor: 3.616

9.  The RNA World: 4,000,000,050 years old.

Authors:  Niles Lehman
Journal:  Life (Basel)       Date:  2015-10-22

Review 10.  Replicable and recombinogenic RNAs.

Authors:  Alexander B Chetverin
Journal:  FEBS Lett       Date:  2004-06-01       Impact factor: 4.124

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  5 in total

1.  Weird sex: the underappreciated diversity of sexual reproduction.

Authors:  Duur Aanen; Madeleine Beekman; Hanna Kokko
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

Review 2.  Negative Epistasis in Experimental RNA Fitness Landscapes.

Authors:  Devin P Bendixsen; Bjørn Østman; Eric J Hayden
Journal:  J Mol Evol       Date:  2017-11-10       Impact factor: 2.395

Review 3.  Modern methods for laboratory diversification of biomolecules.

Authors:  Sinisa Bratulic; Ahmed H Badran
Journal:  Curr Opin Chem Biol       Date:  2017-11-02       Impact factor: 8.822

4.  Random-sequence genetic oligomer pools display an innate potential for ligation and recombination.

Authors:  Hannes Mutschler; Alexander I Taylor; Benjamin T Porebski; Alice Lightowlers; Gillian Houlihan; Mikhail Abramov; Piet Herdewijn; Philipp Holliger
Journal:  Elife       Date:  2018-11-21       Impact factor: 8.713

5.  The evolution of universal adaptations of life is driven by universal properties of matter: energy, entropy, and interaction.

Authors:  Irun R Cohen; Assaf Marron
Journal:  F1000Res       Date:  2020-06-18
  5 in total

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