Literature DB >> 31988127

An RNA polymerase ribozyme that synthesizes its own ancestor.

Katrina F Tjhung1, Maxim N Shokhirev1, David P Horning2, Gerald F Joyce2.   

Abstract

The RNA-based organisms from which modern life is thought to have descended would have depended on an RNA polymerase ribozyme to copy functional RNA molecules, including copying the polymerase itself. Such a polymerase must have been capable of copying structured RNAs with high efficiency and high fidelity to maintain genetic information across successive generations. Here the class I RNA polymerase ribozyme was evolved in vitro for the ability to synthesize functional ribozymes, resulting in the markedly improved ability to synthesize complex RNAs using nucleoside 5'-triphosphate (NTP) substrates. The polymerase is descended from the class I ligase, which contains the same catalytic core as the polymerase. The class I ligase can be synthesized by the improved polymerase as three separate RNA strands that assemble to form a functional ligase. The polymerase also can synthesize the complement of each of these three strands. Despite this remarkable level of activity, only a very small fraction of the assembled ligases retain catalytic activity due to the presence of disabling mutations. Thus, the fidelity of RNA polymerization should be considered a major impediment to the construction of a self-sustained, RNA-based evolving system. The propagation of heritable information requires both efficient and accurate synthesis of genetic molecules, a requirement relevant to both laboratory systems and the early history of life on Earth.

Entities:  

Keywords:  RNA enzyme; RNA replication; directed evolution

Mesh:

Substances:

Year:  2020        PMID: 31988127      PMCID: PMC7022166          DOI: 10.1073/pnas.1914282117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

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Authors:  J A Doudna; S Couture; J W Szostak
Journal:  Science       Date:  1991-03-29       Impact factor: 47.728

4.  An RNA polymerase ribozyme that synthesizes its own ancestor.

Authors:  Katrina F Tjhung; Maxim N Shokhirev; David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-27       Impact factor: 11.205

5.  FLASH: fast length adjustment of short reads to improve genome assemblies.

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Journal:  Bioinformatics       Date:  2011-09-07       Impact factor: 6.937

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Authors:  Qing S Wang; Leslie K L Cheng; Peter J Unrau
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7.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

8.  Self-sustained replication of an RNA enzyme.

Authors:  Tracey A Lincoln; Gerald F Joyce
Journal:  Science       Date:  2009-01-08       Impact factor: 47.728

9.  RNA-catalysed RNA polymerization using nucleoside triphosphates.

Authors:  E H Ekland; D P Bartel
Journal:  Nature       Date:  1996-07-25       Impact factor: 49.962

10.  In-ice evolution of RNA polymerase ribozyme activity.

Authors:  James Attwater; Aniela Wochner; Philipp Holliger
Journal:  Nat Chem       Date:  2013-10-20       Impact factor: 24.427

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  18 in total

1.  An RNA polymerase ribozyme that synthesizes its own ancestor.

Authors:  Katrina F Tjhung; Maxim N Shokhirev; David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-27       Impact factor: 11.205

2.  In vitro selections with RNAs of variable length converge on a robust catalytic core.

Authors:  Milena Popović; Alexander Q Ellingson; Theresa P Chu; Chenyu Wei; Andrew Pohorille; Mark A Ditzler
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

3.  Kinetic Effects of β,γ-Modified Deoxynucleoside 5'-Triphosphate Analogues on RNA-Catalyzed Polymerization of DNA.

Authors:  Noah A Setterholm; Pouya Haratipour; Boris A Kashemirov; Charles E McKenna; Gerald F Joyce
Journal:  Biochemistry       Date:  2020-12-27       Impact factor: 3.162

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8.  Protein-free ribosomal RNA scaffolds can assemble poly-lysine oligos from charged tRNA fragments.

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Review 9.  Social Networking of Quasi-Species Consortia drive Virolution via Persistence.

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Journal:  AIMS Microbiol       Date:  2021-04-30

10.  Site-specific RNA methylation by a methyltransferase ribozyme.

Authors:  Carolin P M Scheitl; Mohammad Ghaem Maghami; Ann-Kathrin Lenz; Claudia Höbartner
Journal:  Nature       Date:  2020-10-28       Impact factor: 49.962

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