Literature DB >> 25918034

Cross-validation and hypothesis testing in neuroimaging: An irenic comment on the exchange between Friston and Lindquist et al.

Philip T Reiss1.   

Abstract

The "ten ironic rules for statistical reviewers" presented by Friston (2012) prompted a rebuttal by Lindquist et al. (2013), which was followed by a rejoinder by Friston (2013). A key issue left unresolved in this discussion is the use of cross-validation to test the significance of predictive analyses. This note discusses the role that cross-validation-based and related hypothesis tests have come to play in modern data analyses, in neuroimaging and other fields. It is shown that such tests need not be suboptimal and can fill otherwise-unmet inferential needs.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Brain decoding; Cross-validation; Likelihood ratio test; Neyman–Pearson Lemma; Null hypothesis; Permutation test

Mesh:

Year:  2015        PMID: 25918034      PMCID: PMC4783767          DOI: 10.1016/j.neuroimage.2015.04.032

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  23 in total

Review 1.  Ten ironic rules for non-statistical reviewers.

Authors:  Karl Friston
Journal:  Neuroimage       Date:  2012-04-13       Impact factor: 6.556

2.  Testing the prediction error difference between 2 predictors.

Authors:  Mark A van de Wiel; Johannes Berkhof; Wessel N van Wieringen
Journal:  Biostatistics       Date:  2009-04-20       Impact factor: 5.899

3.  Added predictive value of high-throughput molecular data to clinical data and its validation.

Authors:  Anne-Laure Boulesteix; Willi Sauerbrei
Journal:  Brief Bioinform       Date:  2011-01-18       Impact factor: 11.622

4.  Testing for improvement in prediction model performance.

Authors:  Margaret Sullivan Pepe; Kathleen F Kerr; Gary Longton; Zheyu Wang
Journal:  Stat Med       Date:  2013-01-07       Impact factor: 2.373

5.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

6.  Ironing out the statistical wrinkles in "ten ironic rules".

Authors:  Martin A Lindquist; Brian Caffo; Ciprian Crainiceanu
Journal:  Neuroimage       Date:  2013-04-12       Impact factor: 6.556

7.  ADHD-200 Global Competition: diagnosing ADHD using personal characteristic data can outperform resting state fMRI measurements.

Authors:  Matthew R G Brown; Gagan S Sidhu; Russell Greiner; Nasimeh Asgarian; Meysam Bastani; Peter H Silverstone; Andrew J Greenshaw; Serdar M Dursun
Journal:  Front Syst Neurosci       Date:  2012-09-28

8.  Functional Causal Mediation Analysis With an Application to Brain Connectivity.

Authors:  Martin A Lindquist
Journal:  J Am Stat Assoc       Date:  2012-12-21       Impact factor: 5.033

9.  Comparing dynamic causal models using AIC, BIC and free energy.

Authors:  W D Penny
Journal:  Neuroimage       Date:  2011-07-27       Impact factor: 6.556

10.  Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions.

Authors:  Quentin Noirhomme; Damien Lesenfants; Francisco Gomez; Andrea Soddu; Jessica Schrouff; Gaëtan Garraux; André Luxen; Christophe Phillips; Steven Laureys
Journal:  Neuroimage Clin       Date:  2014-04-13       Impact factor: 4.881

View more
  2 in total

1.  Individualized Prediction and Clinical Staging of Bipolar Disorders using Neuroanatomical Biomarkers.

Authors:  Benson Mwangi; Mon-Ju Wu; Bo Cao; Ives C Passos; Luca Lavagnino; Zafer Keser; Giovana B Zunta-Soares; Khader M Hasan; Flavio Kapczinski; Jair C Soares
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2016-03-01

Review 2.  Ten simple rules for predictive modeling of individual differences in neuroimaging.

Authors:  Dustin Scheinost; Stephanie Noble; Corey Horien; Abigail S Greene; Evelyn Mr Lake; Mehraveh Salehi; Siyuan Gao; Xilin Shen; David O'Connor; Daniel S Barron; Sarah W Yip; Monica D Rosenberg; R Todd Constable
Journal:  Neuroimage       Date:  2019-03-01       Impact factor: 6.556

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.