Literature DB >> 25898152

High-speed multiparameter photophysical analyses of fluorophore libraries.

Kevin M Dean1,2, Lloyd M Davis3,4, Jennifer L Lubbeck2,5, Premashis Manna2,5, Pia Friis2,5, Amy E Palmer1,2, Ralph Jimenez2,5.   

Abstract

There is a critical need for high-speed multiparameter photophysical measurements of large libraries of fluorescent probe variants for imaging and biosensor development. We present a microfluidic flow cytometer that rapidly assays 10(4)-10(5) member cell-based fluorophore libraries, simultaneously measuring fluorescence lifetime and photobleaching. Together, these photophysical characteristics determine imaging performance. We demonstrate the ability to resolve the diverse photophysical characteristics of different library types and the ability to identify rare populations.

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Year:  2015        PMID: 25898152      PMCID: PMC4648346          DOI: 10.1021/acs.analchem.5b00607

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  18 in total

1.  Low-cost, frequency-domain, fluorescence lifetime confocal microscopy.

Authors:  M J Booth; T Wilson
Journal:  J Microsc       Date:  2004-04       Impact factor: 1.758

2.  Evolution of new nonantibody proteins via iterative somatic hypermutation.

Authors:  Lei Wang; W Coyt Jackson; Paul A Steinbach; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

3.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.

Authors:  Nathan C Shaner; Robert E Campbell; Paul A Steinbach; Ben N G Giepmans; Amy E Palmer; Roger Y Tsien
Journal:  Nat Biotechnol       Date:  2004-11-21       Impact factor: 54.908

4.  Analysis of red-fluorescent proteins provides insight into dark-state conversion and photodegradation.

Authors:  Kevin M Dean; Jennifer L Lubbeck; Jennifer K Binder; Linda R Schwall; Ralph Jimenez; Amy E Palmer
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

5.  Evolution of group 14 rhodamines as platforms for near-infrared fluorescence probes utilizing photoinduced electron transfer.

Authors:  Yuichiro Koide; Yasuteru Urano; Kenjiro Hanaoka; Takuya Terai; Tetsuo Nagano
Journal:  ACS Chem Biol       Date:  2011-03-17       Impact factor: 5.100

6.  Time and frequency-domain measurement of ground-state recovery times in red fluorescent proteins.

Authors:  Premashis Manna; Ralph Jimenez
Journal:  J Phys Chem B       Date:  2015-04-06       Impact factor: 2.991

7.  Programmable microfluidic synthesis of spectrally encoded microspheres.

Authors:  R E Gerver; R Gómez-Sjöberg; B C Baxter; K S Thorn; P M Fordyce; C A Diaz-Botia; B A Helms; J L DeRisi
Journal:  Lab Chip       Date:  2012-11-21       Impact factor: 6.799

8.  Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Authors:  Sean C Bendall; Erin F Simonds; Peng Qiu; El-ad D Amir; Peter O Krutzik; Rachel Finck; Robert V Bruggner; Rachel Melamed; Angelica Trejo; Olga I Ornatsky; Robert S Balderas; Sylvia K Plevritis; Karen Sachs; Dana Pe'er; Scott D Tanner; Garry P Nolan
Journal:  Science       Date:  2011-05-06       Impact factor: 47.728

9.  Microfluidic cell sorter for use in developing red fluorescent proteins with improved photostability.

Authors:  Lloyd M Davis; Jennifer L Lubbeck; Kevin M Dean; Amy E Palmer; Ralph Jimenez
Journal:  Lab Chip       Date:  2013-05-02       Impact factor: 6.799

10.  Improving FRET dynamic range with bright green and red fluorescent proteins.

Authors:  Amy J Lam; François St-Pierre; Yiyang Gong; Jesse D Marshall; Paula J Cranfill; Michelle A Baird; Michael R McKeown; Jörg Wiedenmann; Michael W Davidson; Mark J Schnitzer; Roger Y Tsien; Michael Z Lin
Journal:  Nat Methods       Date:  2012-09-09       Impact factor: 28.547

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  10 in total

1.  Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter.

Authors:  Premashis Manna; Sheng-Ting Hung; Srijit Mukherjee; Pia Friis; David M Simpson; Maria N Lo; Amy E Palmer; Ralph Jimenez
Journal:  Integr Biol (Camb)       Date:  2018-09-17       Impact factor: 2.192

2.  Phasor plotting with frequency-domain flow cytometry.

Authors:  Ruofan Cao; Patrick Jenkins; William Peria; Bryan Sands; Mark Naivar; Roger Brent; Jessica P Houston
Journal:  Opt Express       Date:  2016-06-27       Impact factor: 3.894

Review 3.  The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.

Authors:  Erik A Rodriguez; Robert E Campbell; John Y Lin; Michael Z Lin; Atsushi Miyawaki; Amy E Palmer; Xiaokun Shu; Jin Zhang; Roger Y Tsien
Journal:  Trends Biochem Sci       Date:  2016-11-01       Impact factor: 13.807

4.  A guide to choosing fluorescent protein combinations for flow cytometric analysis based on spectral overlap.

Authors:  Benjamin Kleeman; Andre Olsson; Tess Newkold; Matt Kofron; Monica DeLay; David Hildeman; H Leighton Grimes
Journal:  Cytometry A       Date:  2018-03-13       Impact factor: 4.355

Review 5.  Microfluidic techniques for high throughput single cell analysis.

Authors:  Amy Reece; Bingzhao Xia; Zhongliang Jiang; Benjamin Noren; Ralph McBride; John Oakey
Journal:  Curr Opin Biotechnol       Date:  2016-03-28       Impact factor: 9.740

6.  Droplet Microfluidic Flow Cytometer For Sorting On Transient Cellular Responses Of Genetically-Encoded Sensors.

Authors:  Brett L Fiedler; Steven Van Buskirk; Kyle P Carter; Yan Qin; Margaret C Carpenter; Amy E Palmer; Ralph Jimenez
Journal:  Anal Chem       Date:  2016-12-13       Impact factor: 6.986

7.  Quantifying Acute Fuel and Respiration Dependent pH Homeostasis in Live Cells Using the mCherryTYG Mutant as a Fluorescence Lifetime Sensor.

Authors:  Emily P Haynes; Megha Rajendran; Chace K Henning; Abhipri Mishra; Angeline M Lyon; Mathew Tantama
Journal:  Anal Chem       Date:  2019-06-19       Impact factor: 6.986

8.  A highly photostable and bright green fluorescent protein.

Authors:  Masahiko Hirano; Ryoko Ando; Satoshi Shimozono; Mayu Sugiyama; Hiroshi Kurokawa; Noriyo Takeda; Ryusaku Deguchi; Kazuki Endo; Kei Haga; Reiko Takai-Todaka; Shunsuke Inaura; Yuta Matsumura; Hiroshi Hama; Yasushi Okada; Takahiro Fujiwara; Takuya Morimoto; Kazuhiko Katayama; Atsushi Miyawaki
Journal:  Nat Biotechnol       Date:  2022-04-25       Impact factor: 68.164

9.  In vitro optoacoustic flow cytometry with light scattering referencing.

Authors:  Markus Seeger; Andre C Stiel; Vasilis Ntziachristos
Journal:  Sci Rep       Date:  2021-01-26       Impact factor: 4.379

10.  Absolute quantum yield measurements of fluorescent proteins using a plasmonic nanocavity.

Authors:  Daja Ruhlandt; Martin Andresen; Nickels Jensen; Ingo Gregor; Stefan Jakobs; Jörg Enderlein; Alexey I Chizhik
Journal:  Commun Biol       Date:  2020-10-30
  10 in total

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