Literature DB >> 25878865

Crystal structure of 4-amino-benzoic acid-4-methyl-pyridine (1/1).

M Krishna Kumar1, P Pandi2, S Sudhahar1, G Chakkaravarthi3, R Mohan Kumar1.   

Abstract

In the title 1:1 adduct, C6H7N·C7H7NO2, the carb-oxy-lic acid group is twisted at an angle of 4.32 (18)° with respect to the attached benzene ring. In the crystal, the carb-oxy-lic acid group is linked to the pyridine ring by an O-H⋯N hydrogen bond, forming a dimer. The dimers are linked by N-H⋯O hydrogen bonds, generating (010) sheets.

Entities:  

Keywords:  O—H⋯N and N—H⋯O hydrogen bonds; adduct; crystal structure; layered structure

Year:  2015        PMID: 25878865      PMCID: PMC4384565          DOI: 10.1107/S2056989015000791

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to pyridine derivatives, see: Tomaru et al. (1991 ▸). Katritzky et al. (1996 ▸); Akkurt et al. (2005 ▸). For related structures, see: Smith & Wermuth (2010 ▸); Hemamalini & Fun (2010 ▸); Kannan et al. (2012 ▸); Thanigaimani et al. (2012 ▸); Muralidharan et al. (2013 ▸).

Experimental

Crystal data

C6H7N·C7H7NO2 M = 230.26 Monoclinic, a = 7.5970 (7) Å b = 11.6665 (12) Å c = 7.6754 (8) Å β = 114.200 (3)° V = 620.49 (11) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.28 × 0.24 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.977, T max = 0.983 10064 measured reflections 2144 independent reflections 1458 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.108 S = 1.03 2144 reflections 159 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.13 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015000791/hb7348sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000791/hb7348Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015000791/hb7348fig1.tif The mol­ecular structure of (I), with 30% probability displacement ellipsoids for non-H atoms. CCDC reference: 1043592 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H7N·C7H7NO2F(000) = 244
Mr = 230.26Dx = 1.232 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 2749 reflections
a = 7.5970 (7) Åθ = 3.4–21.8°
b = 11.6665 (12) ŵ = 0.09 mm1
c = 7.6754 (8) ÅT = 295 K
β = 114.200 (3)°Block, colourless
V = 620.49 (11) Å30.28 × 0.24 × 0.20 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer2144 independent reflections
Radiation source: fine-focus sealed tube1458 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
ω and φ scanθmax = 26.7°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.977, Tmax = 0.983k = −14→14
10064 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0554P)2 + 0.0229P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2144 reflectionsΔρmax = 0.12 e Å3
159 parametersΔρmin = −0.13 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.013 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3693 (4)0.1034 (2)0.7149 (4)0.0567 (6)
C20.4434 (4)0.2029 (2)0.6722 (4)0.0591 (7)
H20.36710.24710.56750.071*
C30.6273 (4)0.2362 (2)0.7829 (3)0.0558 (6)
H30.67370.30370.75290.067*
C40.7475 (4)0.1730 (2)0.9383 (4)0.0508 (6)
C50.6737 (4)0.0738 (2)0.9798 (4)0.0594 (7)
H50.75160.02941.08350.071*
C60.4892 (4)0.0392 (2)0.8724 (4)0.0629 (7)
H60.4429−0.02780.90430.076*
C70.9416 (4)0.2104 (2)1.0596 (4)0.0587 (7)
C80.4371 (5)0.4546 (2)1.3188 (5)0.0729 (8)
H80.35670.51481.31830.087*
C90.6306 (4)0.4655 (2)1.4263 (4)0.0693 (8)
H90.67910.53191.49670.083*
C100.7534 (4)0.3784 (2)1.4304 (4)0.0639 (7)
C110.6716 (4)0.2836 (2)1.3242 (4)0.0718 (8)
H110.74870.22201.32290.086*
C120.4767 (5)0.2790 (3)1.2196 (4)0.0766 (9)
H120.42490.21351.14790.092*
C130.9658 (5)0.3866 (3)1.5468 (6)0.0954 (11)
H13A1.03100.39411.46350.143*
H13B1.00990.31861.62290.143*
H13C0.99300.45241.62890.143*
N10.1840 (4)0.0710 (2)0.6087 (4)0.0827 (8)
H1A0.11130.11240.51370.099*
H1B0.13950.00920.63640.099*
N20.3582 (3)0.3627 (2)1.2152 (4)0.0722 (6)
O10.9921 (3)0.30989 (17)1.0123 (3)0.0808 (6)
H11.109 (2)0.324 (3)1.076 (5)0.121*
O21.0516 (3)0.15755 (17)1.1996 (3)0.0778 (6)
U11U22U33U12U13U23
C10.0545 (16)0.0584 (15)0.0526 (15)−0.0071 (14)0.0173 (13)−0.0070 (14)
C20.0599 (17)0.0581 (15)0.0489 (15)0.0009 (12)0.0118 (13)0.0088 (12)
C30.0582 (16)0.0536 (13)0.0509 (15)−0.0050 (13)0.0175 (13)0.0058 (12)
C40.0529 (14)0.0490 (12)0.0442 (13)0.0040 (12)0.0135 (12)0.0026 (12)
C50.0671 (18)0.0516 (14)0.0484 (16)0.0021 (13)0.0124 (14)0.0046 (12)
C60.077 (2)0.0518 (14)0.0590 (17)−0.0076 (14)0.0273 (15)0.0048 (13)
C70.0563 (17)0.0532 (13)0.0583 (17)0.0045 (13)0.0150 (14)0.0003 (14)
C80.0630 (18)0.0626 (16)0.081 (2)0.0031 (15)0.0172 (16)0.0007 (16)
C90.068 (2)0.0617 (17)0.0665 (19)−0.0085 (14)0.0150 (16)−0.0042 (13)
C100.0579 (18)0.0740 (17)0.0585 (17)−0.0045 (16)0.0225 (14)0.0063 (15)
C110.0680 (19)0.0723 (18)0.078 (2)0.0015 (15)0.0325 (18)−0.0048 (16)
C120.077 (2)0.0747 (19)0.074 (2)−0.0158 (17)0.0260 (17)−0.0171 (16)
C130.0604 (19)0.105 (2)0.104 (3)−0.0070 (17)0.0163 (18)0.002 (2)
N10.0655 (16)0.0852 (18)0.0809 (18)−0.0163 (13)0.0132 (14)0.0063 (15)
N20.0567 (14)0.0719 (15)0.0766 (16)−0.0059 (13)0.0157 (12)−0.0023 (13)
O10.0588 (11)0.0691 (12)0.0883 (16)−0.0105 (10)0.0035 (11)0.0130 (11)
O20.0678 (13)0.0726 (12)0.0665 (12)0.0068 (10)0.0006 (10)0.0090 (10)
C1—N11.359 (4)C8—H80.9300
C1—C21.387 (3)C9—C101.371 (4)
C1—C61.397 (4)C9—H90.9300
C2—C31.361 (4)C10—C111.363 (4)
C2—H20.9300C10—C131.493 (5)
C3—C41.380 (3)C11—C121.366 (4)
C3—H30.9300C11—H110.9300
C4—C51.379 (3)C12—N21.319 (4)
C4—C71.452 (3)C12—H120.9300
C5—C61.364 (4)C13—H13A0.9600
C5—H50.9300C13—H13B0.9600
C6—H60.9300C13—H13C0.9600
C7—O21.224 (3)N1—H1A0.8600
C7—O11.319 (3)N1—H1B0.8600
C8—N21.323 (3)O1—H10.836 (10)
C8—C91.365 (4)
N1—C1—C2120.8 (2)C8—C9—C10119.9 (3)
N1—C1—C6121.2 (2)C8—C9—H9120.0
C2—C1—C6118.0 (2)C10—C9—H9120.0
C3—C2—C1120.2 (2)C11—C10—C9116.6 (3)
C3—C2—H2119.9C11—C10—C13121.7 (3)
C1—C2—H2119.9C9—C10—C13121.7 (3)
C2—C3—C4122.2 (2)C10—C11—C12120.2 (3)
C2—C3—H3118.9C10—C11—H11119.9
C4—C3—H3118.9C12—C11—H11119.9
C5—C4—C3117.4 (2)N2—C12—C11123.4 (3)
C5—C4—C7120.4 (2)N2—C12—H12118.3
C3—C4—C7122.1 (2)C11—C12—H12118.3
C6—C5—C4121.5 (2)C10—C13—H13A109.5
C6—C5—H5119.2C10—C13—H13B109.5
C4—C5—H5119.2H13A—C13—H13B109.5
C5—C6—C1120.6 (2)C10—C13—H13C109.5
C5—C6—H6119.7H13A—C13—H13C109.5
C1—C6—H6119.7H13B—C13—H13C109.5
O2—C7—O1120.9 (3)C1—N1—H1A120.0
O2—C7—C4124.1 (2)C1—N1—H1B120.0
O1—C7—C4115.0 (2)H1A—N1—H1B120.0
N2—C8—C9123.3 (3)C12—N2—C8116.6 (3)
N2—C8—H8118.4C7—O1—H1112 (3)
C9—C8—H8118.4
N1—C1—C2—C3178.1 (3)C3—C4—C7—O2179.2 (3)
C6—C1—C2—C3−0.5 (4)C5—C4—C7—O1−176.1 (2)
C1—C2—C3—C40.9 (4)C3—C4—C7—O11.3 (3)
C2—C3—C4—C5−0.5 (4)N2—C8—C9—C100.0 (5)
C2—C3—C4—C7−178.1 (2)C8—C9—C10—C11−0.2 (4)
C3—C4—C5—C6−0.2 (4)C8—C9—C10—C13−179.7 (3)
C7—C4—C5—C6177.4 (2)C9—C10—C11—C120.4 (4)
C4—C5—C6—C10.5 (4)C13—C10—C11—C12179.9 (3)
N1—C1—C6—C5−178.8 (3)C10—C11—C12—N2−0.4 (5)
C2—C1—C6—C5−0.2 (4)C11—C12—N2—C80.1 (5)
C5—C4—C7—O21.7 (4)C9—C8—N2—C120.1 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N2i0.84 (1)1.81 (1)2.644 (3)177 (4)
N1—H1A···O2ii0.862.323.049 (3)142
N1—H1B···O2iii0.862.173.031 (3)174
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1N2i 0.84(1)1.81(1)2.644(3)177(4)
N1H1AO2ii 0.862.323.049(3)142
N1H1BO2iii 0.862.173.031(3)174

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Methyl-pyridinium 2-carb-oxy-4,5-dichloro-benzoate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

3.  2-Amino-4-methyl-pyridinium 2-nitro-benzoate.

Authors:  Srinivasan Muralidharan; Narayanan Elavarasu; Thothadri Srinivasan; Rengasamy Gopalakrishnan; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-18

4.  2-Amino-4-methyl-pyridinium 2-hy-droxy-benzoate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  2-Amino-5-methyl-pyridinium 2-amino-benzoate.

Authors:  Kaliyaperumal Thanigaimani; Abbas Farhadikoutenaei; Nuridayanti Che Khalib; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-24

7.  2-Amino-5-chloro-pyridinium 4-amino-benzoate.

Authors:  V Kannan; P Sugumar; S Brahadeeswaran; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.