Literature DB >> 21579358

4-Methyl-pyridinium 2-carb-oxy-4,5-dichloro-benzoate monohydrate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the structure of the 1:1 proton-transfer compound of 4-methyl-pyridine (γ-picoline) with 4,5-dichloro-phthalic acid, C(6)H(8)N(+)·C(8)H(3)Cl(2)O(4) (-)·H(2)O, determined at 200 K, the 4,5-dichloro-phthalate anions are bridged by the water mol-ecule through O-H⋯O(carbox-yl) hydrogen bonds, giving zigzag chains which extend along the c-axis direction. The 4-methyl-pyridinium cations are linked to the chains through single N-H⋯O(water) hydrogen bonds and occupy the voids within the chains in the one-dimensional structure. The anions have the common 'planar' conformation with a short intra-molecular O-H⋯O(carbox-yl) hydrogen bond.

Entities:  

Year:  2010        PMID: 21579358      PMCID: PMC2979372          DOI: 10.1107/S1600536810015503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of other hydrogen 4,5-dichloro­phthalate salts, see: Mallinson et al. (2003 ▶); Bozkurt et al. (2006 ▶); Smith et al. (2007 ▶, 2008a ▶,b ▶, 2009 ▶, 2009a ▶,b ▶); Smith & Wermuth (2010a ▶,b ▶).

Experimental

Crystal data

C6H8NC8H3Cl2O4 −·H2O M = 346.15 Monoclinic, a = 3.8398 (3) Å b = 29.5531 (17) Å c = 12.9855 (7) Å β = 90.054 (6)° V = 1473.57 (16) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 200 K 0.30 × 0.20 × 0.08 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.930, T max = 0.980 8898 measured reflections 2579 independent reflections 2156 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.129 S = 1.29 2579 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810015503/jj2029sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015503/jj2029Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H8N+·C8H3Cl2O4·H2OF(000) = 712
Mr = 346.15Dx = 1.560 Mg m3
Monoclinic, P21/nMelting point: 445 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 3.8398 (3) ÅCell parameters from 4516 reflections
b = 29.5531 (17) Åθ = 3.1–28.7°
c = 12.9855 (7) ŵ = 0.46 mm1
β = 90.054 (6)°T = 200 K
V = 1473.57 (16) Å3Plate, colourless
Z = 40.30 × 0.20 × 0.08 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer2579 independent reflections
Radiation source: Enhance (Mo) X-ray source2156 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 16.08 pixels mm-1θmax = 25.0°, θmin = 3.1°
ω scansh = −4→4
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −35→31
Tmin = 0.930, Tmax = 0.980l = −15→15
8898 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: geom'
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.29w = 1/[σ2(Fo2) + (0.042P)2 + 1.7305P] where P = (Fo2 + 2Fc2)/3
2579 reflections(Δ/σ)max < 0.001
215 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl40.1942 (3)−0.02601 (3)0.63754 (7)0.0379 (3)
Cl5−0.1079 (2)0.00515 (3)0.85706 (7)0.0372 (3)
O110.0394 (8)0.17470 (9)0.8599 (2)0.0471 (10)
O120.2068 (8)0.20432 (9)0.7127 (2)0.0490 (10)
O210.4257 (8)0.18118 (9)0.5499 (2)0.0504 (10)
O220.6118 (7)0.11959 (9)0.47323 (19)0.0399 (9)
C10.1694 (8)0.12249 (11)0.7262 (2)0.0233 (10)
C20.3066 (8)0.10876 (11)0.6304 (2)0.0225 (10)
C30.3086 (8)0.06268 (11)0.6068 (2)0.0249 (10)
C40.1817 (8)0.03024 (11)0.6731 (3)0.0252 (10)
C50.0513 (8)0.04386 (11)0.7687 (2)0.0252 (10)
C60.0428 (8)0.08917 (11)0.7929 (2)0.0254 (10)
C110.1371 (9)0.17020 (12)0.7704 (3)0.0328 (11)
C210.4622 (9)0.13795 (12)0.5446 (3)0.0291 (11)
N1A1.1032 (8)0.19332 (11)0.2708 (3)0.0411 (11)
C2A1.2276 (11)0.21031 (13)0.1826 (3)0.0447 (14)
C3A1.3735 (9)0.18251 (13)0.1103 (3)0.0370 (12)
C4A1.3940 (8)0.13645 (12)0.1288 (2)0.0282 (10)
C5A1.2671 (9)0.12034 (12)0.2211 (3)0.0333 (11)
C6A1.1180 (9)0.14896 (14)0.2913 (3)0.0369 (11)
C41A1.5391 (10)0.10520 (15)0.0494 (3)0.0463 (14)
O1W0.7863 (9)0.23983 (11)0.4193 (2)0.0462 (10)
H30.399300.053500.543800.0300*
H6−0.050700.098000.855800.0300*
H210.334 (15)0.191 (2)0.618 (5)0.100 (19)*
H1A1.012 (12)0.211 (2)0.315 (4)0.049 (10)*
H2A1.214700.241300.170400.0540*
H3A1.458500.194500.049000.0450*
H5A1.282800.089600.235800.0400*
H6A1.028100.137700.352700.0440*
H41A1.617100.12240−0.008900.0560*
H42A1.361700.084300.027900.0560*
H43A1.731700.088700.078100.0560*
H11W0.666 (13)0.2227 (18)0.449 (4)0.065 (17)*
H12W0.694 (11)0.2626 (17)0.405 (3)0.046 (14)*
U11U22U33U12U13U23
Cl40.0516 (6)0.0224 (4)0.0396 (5)−0.0018 (4)0.0113 (4)−0.0043 (4)
Cl50.0483 (5)0.0316 (5)0.0318 (5)−0.0034 (4)0.0108 (4)0.0091 (4)
O110.074 (2)0.0310 (15)0.0363 (16)−0.0029 (13)0.0195 (14)−0.0095 (12)
O120.084 (2)0.0225 (14)0.0406 (16)0.0024 (13)0.0133 (15)0.0012 (12)
O210.083 (2)0.0280 (15)0.0403 (17)−0.0001 (14)0.0222 (15)0.0098 (12)
O220.0534 (16)0.0394 (15)0.0269 (14)0.0010 (12)0.0122 (12)0.0059 (11)
C10.0232 (17)0.0233 (17)0.0234 (17)0.0009 (13)−0.0027 (13)0.0001 (13)
C20.0225 (16)0.0244 (17)0.0206 (17)0.0021 (13)−0.0019 (13)0.0042 (13)
C30.0273 (17)0.0264 (18)0.0209 (16)0.0014 (13)0.0039 (13)−0.0017 (13)
C40.0281 (17)0.0212 (17)0.0264 (17)0.0023 (13)0.0023 (13)−0.0015 (13)
C50.0268 (17)0.0249 (17)0.0240 (17)0.0002 (13)0.0028 (13)0.0057 (14)
C60.0256 (17)0.0327 (19)0.0179 (16)0.0014 (14)0.0017 (13)−0.0036 (14)
C110.039 (2)0.0253 (19)0.034 (2)0.0018 (15)0.0015 (16)−0.0026 (15)
C210.0315 (19)0.032 (2)0.0237 (18)−0.0023 (14)0.0016 (14)0.0051 (15)
N1A0.0374 (18)0.043 (2)0.043 (2)0.0010 (14)−0.0022 (15)−0.0190 (16)
C2A0.046 (2)0.029 (2)0.059 (3)−0.0040 (17)0.001 (2)0.0014 (19)
C3A0.037 (2)0.040 (2)0.034 (2)−0.0036 (16)0.0039 (16)0.0114 (17)
C4A0.0237 (17)0.038 (2)0.0228 (17)−0.0011 (14)−0.0019 (13)−0.0018 (15)
C5A0.0339 (19)0.032 (2)0.034 (2)−0.0021 (15)−0.0002 (16)0.0050 (16)
C6A0.036 (2)0.050 (2)0.0248 (19)−0.0044 (17)0.0016 (15)0.0032 (17)
C41A0.037 (2)0.059 (3)0.043 (2)0.0042 (19)0.0065 (18)−0.013 (2)
O1W0.078 (2)0.0254 (16)0.0352 (16)0.0033 (16)0.0159 (15)0.0043 (13)
Cl4—C41.726 (3)C3—C41.378 (5)
Cl5—C51.732 (3)C4—C51.398 (5)
O11—C111.229 (5)C5—C61.376 (5)
O12—C111.285 (5)C3—H30.9300
O21—C211.287 (4)C6—H60.9300
O22—C211.218 (5)C2A—C3A1.368 (5)
O21—H211.00 (6)C3A—C4A1.385 (5)
O1W—H12W0.78 (5)C4A—C5A1.379 (5)
O1W—H11W0.79 (5)C4A—C41A1.493 (5)
N1A—C6A1.339 (5)C5A—C6A1.369 (5)
N1A—C2A1.339 (5)C2A—H2A0.9300
N1A—H1A0.85 (5)C3A—H3A0.9300
C1—C111.527 (5)C5A—H5A0.9300
C1—C61.399 (4)C6A—H6A0.9300
C1—C21.411 (4)C41A—H43A0.9600
C2—C31.396 (5)C41A—H41A0.9600
C2—C211.531 (5)C41A—H42A0.9600
C21—O21—H21112 (3)C4—C3—H3119.00
H11W—O1W—H12W114 (5)C2—C3—H3119.00
C2A—N1A—C6A121.5 (4)C1—C6—H6119.00
C2A—N1A—H1A120 (4)C5—C6—H6119.00
C6A—N1A—H1A119 (4)N1A—C2A—C3A120.6 (4)
C2—C1—C11128.9 (3)C2A—C3A—C4A119.7 (3)
C6—C1—C11112.9 (3)C3A—C4A—C41A120.7 (3)
C2—C1—C6118.3 (3)C3A—C4A—C5A118.1 (3)
C1—C2—C21128.8 (3)C5A—C4A—C41A121.3 (3)
C3—C2—C21112.8 (3)C4A—C5A—C6A120.9 (3)
C1—C2—C3118.4 (3)N1A—C6A—C5A119.4 (4)
C2—C3—C4122.7 (3)C3A—C2A—H2A120.00
C3—C4—C5118.8 (3)N1A—C2A—H2A120.00
Cl4—C4—C3119.5 (3)C2A—C3A—H3A120.00
Cl4—C4—C5121.7 (3)C4A—C3A—H3A120.00
Cl5—C5—C4121.7 (3)C6A—C5A—H5A120.00
C4—C5—C6119.4 (3)C4A—C5A—H5A120.00
Cl5—C5—C6118.9 (2)N1A—C6A—H6A120.00
C1—C6—C5122.4 (3)C5A—C6A—H6A120.00
O12—C11—C1119.2 (3)C4A—C41A—H42A109.00
O11—C11—C1118.7 (3)C4A—C41A—H43A109.00
O11—C11—O12122.1 (3)C4A—C41A—H41A110.00
O21—C21—O22122.3 (3)H41A—C41A—H43A110.00
O21—C21—C2118.5 (3)H42A—C41A—H43A109.00
O22—C21—C2119.2 (3)H41A—C41A—H42A109.00
C2A—N1A—C6A—C5A0.7 (5)C1—C2—C21—O22169.9 (3)
C6A—N1A—C2A—C3A0.2 (6)C1—C2—C3—C40.1 (5)
C6—C1—C2—C21−179.6 (3)C2—C3—C4—C5−1.2 (5)
C11—C1—C2—C210.3 (5)C2—C3—C4—Cl4180.0 (3)
C2—C1—C6—C50.7 (5)C3—C4—C5—Cl5−179.2 (2)
C11—C1—C6—C5−179.1 (3)Cl4—C4—C5—Cl5−0.4 (4)
C2—C1—C11—O11−173.2 (3)Cl4—C4—C5—C6−179.2 (2)
C2—C1—C11—O128.0 (5)C3—C4—C5—C62.0 (5)
C6—C1—C11—O116.7 (4)C4—C5—C6—C1−1.8 (5)
C11—C1—C2—C3180.0 (3)Cl5—C5—C6—C1179.4 (2)
C6—C1—C11—O12−172.2 (3)N1A—C2A—C3A—C4A−0.3 (6)
C6—C1—C2—C30.1 (4)C2A—C3A—C4A—C5A−0.5 (5)
C21—C2—C3—C4179.9 (3)C2A—C3A—C4A—C41A177.6 (3)
C1—C2—C21—O21−11.1 (5)C41A—C4A—C5A—C6A−176.6 (3)
C3—C2—C21—O21169.2 (3)C3A—C4A—C5A—C6A1.5 (5)
C3—C2—C21—O22−9.8 (4)C4A—C5A—C6A—N1A−1.6 (5)
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1W0.85 (5)1.82 (5)2.663 (5)170 (5)
O1W—H11W···O210.79 (5)2.02 (5)2.793 (4)168 (5)
O1W—H12W···O11i0.78 (5)2.03 (5)2.806 (4)170 (4)
O21—H21···O121.00 (6)1.38 (6)2.376 (4)180 (8)
C2A—H2A···O12i0.932.593.243 (5)128
C2A—H2A···O12ii0.932.543.147 (5)123
C6A—H6A···O220.932.303.181 (5)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1A⋯O1W0.85 (5)1.82 (5)2.663 (5)170 (5)
O1W—H11W⋯O210.79 (5)2.02 (5)2.793 (4)168 (5)
O1W—H12W⋯O11i0.78 (5)2.03 (5)2.806 (4)170 (4)
O21—H21⋯O121.00 (6)1.38 (6)2.376 (4)180 (8)

Symmetry code: (i) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  From weak interactions to covalent bonds: a continuum in the complexes of 1,8-bis(dimethylamino)naphthalene.

Authors:  Paul R Mallinson; Garry T Smith; Chick C Wilson; Eugeniusz Grech; Krzysztof Wozniak
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

3.  4-Chloro-anilinium 2-carb-oxy-4,5-dichloro-benzoate.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

4.  Zero-, one- and two-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the monocyclic heteroaromatic Lewis bases 2-aminopyrimidine, nicotinamide and isonicotinamide.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2009-02-21       Impact factor: 1.172

5.  Unusual hydrate stabilization in the two-dimensional layered structure of quinacrinium bis(2-carboxy-4,5-dichlorobenzoate) tetrahydrate, a proton-transfer compound of the drug quinacrine.

Authors:  Graham Smith; Urs D Wermuth; Dalius S Sagatys
Journal:  Acta Crystallogr C       Date:  2009-03-07       Impact factor: 1.172

6.  Two- and three-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with the isomeric monoaminobenzoic acids.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-08-29       Impact factor: 1.172

7.  One-dimensional hydrogen-bonded structures in the 1:1 proton-transfer compounds of 4,5-dichlorophthalic acid with 8-hydroxyquinoline, 8-aminoquinoline and quinoline-2-carboxylic acid (quinaldic acid).

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-02-23       Impact factor: 1.172

8.  Isopropyl-aminium 2-carb-oxy-4,5-di-chloro-benzoate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

9.  Ethane-1,2-diaminium 4,5-dichloro-phthalate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  2 in total

1.  Crystal structure of 4-amino-benzoic acid-4-methyl-pyridine (1/1).

Authors:  M Krishna Kumar; P Pandi; S Sudhahar; G Chakkaravarthi; R Mohan Kumar
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-21

2.  Crystal structures of 2-methyl-pyridinium hydrogen 2,3-bis-(4-methyl-benzo-yloxy)succinate and bis-[4-methyl-pyridinium hydrogen 2,3-bis-(4-methyl-benzo-yloxy)succinate] penta-hydrate.

Authors:  P Sivakumar; S Israel; G Chakkaravarthi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-15
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.