Literature DB >> 23795082

2-Amino-4-methyl-pyridinium 2-nitro-benzoate.

Srinivasan Muralidharan1, Narayanan Elavarasu, Thothadri Srinivasan, Rengasamy Gopalakrishnan, Devadasan Velmurugan.   

Abstract

In the title mol-ecular salt, C6H9N2 (+)·C7H4NO4 (-), the original pyridine N atom of 2-amino-4-methyl-pyridine is protonated and the carb-oxylic acid group of nitro-benzoic acid is deprotonated. In the crystal, the ions are linked by N-H⋯O hydrogen bonds, forming chains propagating along [001]. The chains are linked via C-H⋯O hydrogen bonds, forming two-dimensional networks lying parallel to the bc plane.

Entities:  

Year:  2013        PMID: 23795082      PMCID: PMC3685063          DOI: 10.1107/S1600536813012919

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Navarro Ranninger et al. (1985 ▶); Luque et al. (1997 ▶); Qin et al. (1999 ▶); Jin et al. (2001 ▶); Albrecht et al. (2003 ▶); Kvick & Noordik (1977 ▶).

Experimental

Crystal data

C6H9N2C7H4NO4 M = 275.26 Monoclinic, a = 12.2049 (3) Å b = 9.8463 (2) Å c = 11.5405 (2) Å β = 107.106 (1)° V = 1325.51 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.969, T max = 0.979 12523 measured reflections 3289 independent reflections 2644 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.125 S = 1.06 3289 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813012919/su2590sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012919/su2590Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012919/su2590Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4F(000) = 576
Mr = 275.26Dx = 1.379 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3289 reflections
a = 12.2049 (3) Åθ = 1.8–28.4°
b = 9.8463 (2) ŵ = 0.11 mm1
c = 11.5405 (2) ÅT = 293 K
β = 107.106 (1)°Block, colourless
V = 1325.51 (5) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer3289 independent reflections
Radiation source: fine-focus sealed tube2644 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
ω and φ scansθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→16
Tmin = 0.969, Tmax = 0.979k = −12→13
12523 measured reflectionsl = −12→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.125w = 1/[σ2(Fo2) + (0.0582P)2 + 0.2995P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.004
3289 reflectionsΔρmax = 0.26 e Å3
195 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.031 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.61383 (11)0.04795 (13)0.39832 (12)0.0428 (3)
C20.53048 (13)0.13768 (17)0.40961 (15)0.0577 (4)
H20.46060.14370.34940.069*
C30.55274 (15)0.21813 (17)0.51177 (17)0.0631 (4)
H30.49790.27980.52020.076*
C40.65544 (15)0.20749 (16)0.60095 (15)0.0578 (4)
H40.66940.26050.67050.069*
C50.73827 (12)0.11780 (14)0.58743 (12)0.0469 (3)
H50.80760.11140.64840.056*
C60.72002 (10)0.03729 (12)0.48485 (10)0.0367 (3)
C70.81856 (11)−0.04361 (12)0.46565 (11)0.0383 (3)
C80.87671 (12)0.30082 (14)0.40898 (11)0.0472 (3)
H80.86420.25440.33600.057*
C90.80301 (12)0.39954 (14)0.41863 (12)0.0483 (3)
H90.74070.42160.35260.058*
C100.82151 (11)0.46900 (13)0.52995 (12)0.0429 (3)
C110.91448 (12)0.43446 (13)0.62498 (11)0.0423 (3)
H110.92780.47940.69870.051*
C120.99021 (11)0.33137 (13)0.61202 (11)0.0399 (3)
C130.73825 (14)0.57626 (16)0.54149 (15)0.0597 (4)
H13A0.75590.60440.62460.090*
H13B0.66180.54030.51530.090*
H13C0.74370.65280.49200.090*
N10.58459 (11)−0.04327 (14)0.29302 (11)0.0562 (3)
N30.96840 (10)0.26833 (11)0.50367 (9)0.0417 (3)
N41.08159 (12)0.29199 (15)0.70053 (11)0.0561 (3)
O10.53069 (14)0.00397 (18)0.19509 (11)0.0954 (5)
O20.61421 (12)−0.16147 (12)0.30903 (11)0.0771 (4)
O30.83221 (9)−0.04027 (11)0.36362 (9)0.0547 (3)
O40.88257 (8)−0.10404 (11)0.55661 (8)0.0518 (3)
H4B1.0969 (15)0.3317 (18)0.7709 (17)0.059 (5)*
H4A1.1221 (15)0.2174 (19)0.6872 (16)0.065 (5)*
H3A1.0192 (15)0.2040 (18)0.4898 (16)0.064 (5)*
U11U22U33U12U13U23
C10.0439 (7)0.0438 (6)0.0385 (6)0.0005 (5)0.0088 (5)0.0079 (5)
C20.0448 (7)0.0628 (9)0.0619 (9)0.0129 (6)0.0101 (6)0.0191 (7)
C30.0659 (10)0.0565 (9)0.0744 (11)0.0243 (7)0.0323 (9)0.0124 (8)
C40.0738 (10)0.0519 (8)0.0533 (8)0.0144 (7)0.0272 (8)−0.0016 (6)
C50.0513 (7)0.0510 (7)0.0379 (6)0.0061 (6)0.0122 (6)−0.0011 (5)
C60.0409 (6)0.0363 (6)0.0334 (6)0.0026 (5)0.0118 (5)0.0053 (4)
C70.0410 (6)0.0395 (6)0.0335 (6)0.0019 (5)0.0095 (5)−0.0001 (5)
C80.0572 (8)0.0520 (7)0.0299 (6)0.0070 (6)0.0089 (5)−0.0020 (5)
C90.0504 (7)0.0528 (7)0.0368 (6)0.0087 (6)0.0053 (5)0.0017 (5)
C100.0460 (7)0.0396 (6)0.0435 (7)0.0020 (5)0.0139 (6)0.0008 (5)
C110.0503 (7)0.0417 (6)0.0352 (6)0.0010 (5)0.0130 (5)−0.0047 (5)
C120.0460 (7)0.0416 (6)0.0321 (6)0.0010 (5)0.0115 (5)0.0005 (5)
C130.0599 (9)0.0541 (8)0.0621 (9)0.0150 (7)0.0131 (7)−0.0064 (7)
N10.0510 (7)0.0649 (8)0.0446 (7)−0.0082 (6)0.0016 (5)−0.0002 (6)
N30.0479 (6)0.0452 (6)0.0318 (5)0.0083 (5)0.0114 (4)−0.0001 (4)
N40.0627 (8)0.0625 (8)0.0355 (6)0.0192 (6)0.0026 (5)−0.0050 (5)
O10.1008 (11)0.1144 (12)0.0473 (7)0.0141 (9)−0.0148 (7)0.0027 (7)
O20.1014 (10)0.0528 (7)0.0671 (8)−0.0131 (6)0.0094 (7)−0.0113 (6)
O30.0669 (7)0.0634 (6)0.0391 (5)0.0162 (5)0.0237 (5)0.0062 (4)
O40.0522 (6)0.0648 (6)0.0372 (5)0.0209 (5)0.0111 (4)0.0079 (4)
C1—C21.382 (2)C9—C101.4137 (19)
C1—C61.3880 (17)C9—H90.9300
C1—N11.4682 (18)C10—C111.3688 (18)
C2—C31.379 (3)C10—C131.4985 (19)
C2—H20.9300C11—C121.4101 (18)
C3—C41.372 (2)C11—H110.9300
C3—H30.9300C12—N41.3295 (17)
C4—C51.385 (2)C12—N31.3505 (16)
C4—H40.9300C13—H13A0.9600
C5—C61.3872 (18)C13—H13B0.9600
C5—H50.9300C13—H13C0.9600
C6—C71.5122 (17)N1—O21.2165 (18)
C7—O31.2372 (15)N1—O11.2203 (17)
C7—O41.2585 (15)N3—H3A0.933 (18)
C8—C91.3510 (19)N4—H4B0.871 (19)
C8—N31.3526 (17)N4—H4A0.923 (19)
C8—H80.9300
C2—C1—C6122.54 (13)C10—C9—H9120.3
C2—C1—N1117.55 (13)C11—C10—C9118.75 (12)
C6—C1—N1119.83 (12)C11—C10—C13121.87 (12)
C3—C2—C1118.83 (14)C9—C10—C13119.37 (12)
C3—C2—H2120.6C10—C11—C12120.57 (12)
C1—C2—H2120.6C10—C11—H11119.7
C4—C3—C2120.27 (14)C12—C11—H11119.7
C4—C3—H3119.9N4—C12—N3118.01 (12)
C2—C3—H3119.9N4—C12—C11123.81 (12)
C3—C4—C5120.01 (15)N3—C12—C11118.18 (11)
C3—C4—H4120.0C10—C13—H13A109.5
C5—C4—H4120.0C10—C13—H13B109.5
C4—C5—C6121.40 (13)H13A—C13—H13B109.5
C4—C5—H5119.3C10—C13—H13C109.5
C6—C5—H5119.3H13A—C13—H13C109.5
C5—C6—C1116.90 (11)H13B—C13—H13C109.5
C5—C6—C7119.41 (11)O2—N1—O1124.08 (15)
C1—C6—C7123.29 (11)O2—N1—C1118.07 (12)
O3—C7—O4125.59 (12)O1—N1—C1117.84 (14)
O3—C7—C6117.46 (11)C12—N3—C8122.02 (11)
O4—C7—C6116.88 (10)C12—N3—H3A120.8 (11)
C9—C8—N3121.08 (12)C8—N3—H3A117.1 (11)
C9—C8—H8119.5C12—N4—H4B119.2 (11)
N3—C8—H8119.5C12—N4—H4A118.3 (11)
C8—C9—C10119.39 (12)H4B—N4—H4A122.2 (16)
C8—C9—H9120.3
C6—C1—C2—C3−1.2 (2)N3—C8—C9—C10−0.6 (2)
N1—C1—C2—C3175.64 (14)C8—C9—C10—C110.4 (2)
C1—C2—C3—C4−0.8 (2)C8—C9—C10—C13−178.59 (14)
C2—C3—C4—C51.4 (3)C9—C10—C11—C12−0.1 (2)
C3—C4—C5—C60.0 (2)C13—C10—C11—C12178.84 (13)
C4—C5—C6—C1−1.9 (2)C10—C11—C12—N4−179.53 (14)
C4—C5—C6—C7171.12 (13)C10—C11—C12—N30.1 (2)
C2—C1—C6—C52.48 (19)C2—C1—N1—O2−137.16 (16)
N1—C1—C6—C5−174.27 (12)C6—C1—N1—O239.75 (19)
C2—C1—C6—C7−170.21 (12)C2—C1—N1—O141.9 (2)
N1—C1—C6—C713.05 (18)C6—C1—N1—O1−141.19 (15)
C5—C6—C7—O3−134.09 (13)N4—C12—N3—C8179.29 (13)
C1—C6—C7—O338.42 (18)C11—C12—N3—C8−0.33 (19)
C5—C6—C7—O443.01 (17)C9—C8—N3—C120.6 (2)
C1—C6—C7—O4−144.48 (13)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O4i0.933 (18)1.752 (19)2.6746 (16)169.5 (17)
N4—H4A···O3i0.923 (19)1.972 (19)2.8734 (18)164.9 (17)
N4—H4B···O4ii0.871 (19)2.033 (19)2.8937 (16)169.7 (18)
C11—H11···O3iii0.932.583.3624 (16)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O4i 0.933 (18)1.752 (19)2.6746 (16)169.5 (17)
N4—H4A⋯O3i 0.923 (19)1.972 (19)2.8734 (18)164.9 (17)
N4—H4B⋯O4ii 0.871 (19)2.033 (19)2.8937 (16)169.7 (18)
C11—H11⋯O3iii 0.932.583.3624 (16)142

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  Crystal structure of 4-amino-benzoic acid-4-methyl-pyridine (1/1).

Authors:  M Krishna Kumar; P Pandi; S Sudhahar; G Chakkaravarthi; R Mohan Kumar
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-21
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.