| Literature DB >> 23795082 |
Srinivasan Muralidharan1, Narayanan Elavarasu, Thothadri Srinivasan, Rengasamy Gopalakrishnan, Devadasan Velmurugan.
Abstract
In the title mol-ecular salt, C6H9N2 (+)·C7H4NO4 (-), the original pyridine N atom of 2-amino-4-methyl-pyridine is protonated and the carb-oxylic acid group of nitro-benzoic acid is deprotonated. In the crystal, the ions are linked by N-H⋯O hydrogen bonds, forming chains propagating along [001]. The chains are linked via C-H⋯O hydrogen bonds, forming two-dimensional networks lying parallel to the bc plane.Entities:
Year: 2013 PMID: 23795082 PMCID: PMC3685063 DOI: 10.1107/S1600536813012919
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4NO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3289 reflections |
| θ = 1.8–28.4° | |
| µ = 0.11 mm−1 | |
| β = 107.106 (1)° | Block, colourless |
| 0.30 × 0.25 × 0.20 mm | |
| Bruker SMART APEXII area-detector diffractometer | 3289 independent reflections |
| Radiation source: fine-focus sealed tube | 2644 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 28.4°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 12523 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.004 | |
| 3289 reflections | Δρmax = 0.26 e Å−3 |
| 195 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.031 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.61383 (11) | 0.04795 (13) | 0.39832 (12) | 0.0428 (3) | |
| C2 | 0.53048 (13) | 0.13768 (17) | 0.40961 (15) | 0.0577 (4) | |
| H2 | 0.4606 | 0.1437 | 0.3494 | 0.069* | |
| C3 | 0.55274 (15) | 0.21813 (17) | 0.51177 (17) | 0.0631 (4) | |
| H3 | 0.4979 | 0.2798 | 0.5202 | 0.076* | |
| C4 | 0.65544 (15) | 0.20749 (16) | 0.60095 (15) | 0.0578 (4) | |
| H4 | 0.6694 | 0.2605 | 0.6705 | 0.069* | |
| C5 | 0.73827 (12) | 0.11780 (14) | 0.58743 (12) | 0.0469 (3) | |
| H5 | 0.8076 | 0.1114 | 0.6484 | 0.056* | |
| C6 | 0.72002 (10) | 0.03729 (12) | 0.48485 (10) | 0.0367 (3) | |
| C7 | 0.81856 (11) | −0.04361 (12) | 0.46565 (11) | 0.0383 (3) | |
| C8 | 0.87671 (12) | 0.30082 (14) | 0.40898 (11) | 0.0472 (3) | |
| H8 | 0.8642 | 0.2544 | 0.3360 | 0.057* | |
| C9 | 0.80301 (12) | 0.39954 (14) | 0.41863 (12) | 0.0483 (3) | |
| H9 | 0.7407 | 0.4216 | 0.3526 | 0.058* | |
| C10 | 0.82151 (11) | 0.46900 (13) | 0.52995 (12) | 0.0429 (3) | |
| C11 | 0.91448 (12) | 0.43446 (13) | 0.62498 (11) | 0.0423 (3) | |
| H11 | 0.9278 | 0.4794 | 0.6987 | 0.051* | |
| C12 | 0.99021 (11) | 0.33137 (13) | 0.61202 (11) | 0.0399 (3) | |
| C13 | 0.73825 (14) | 0.57626 (16) | 0.54149 (15) | 0.0597 (4) | |
| H13A | 0.7559 | 0.6044 | 0.6246 | 0.090* | |
| H13B | 0.6618 | 0.5403 | 0.5153 | 0.090* | |
| H13C | 0.7437 | 0.6528 | 0.4920 | 0.090* | |
| N1 | 0.58459 (11) | −0.04327 (14) | 0.29302 (11) | 0.0562 (3) | |
| N3 | 0.96840 (10) | 0.26833 (11) | 0.50367 (9) | 0.0417 (3) | |
| N4 | 1.08159 (12) | 0.29199 (15) | 0.70053 (11) | 0.0561 (3) | |
| O1 | 0.53069 (14) | 0.00397 (18) | 0.19509 (11) | 0.0954 (5) | |
| O2 | 0.61421 (12) | −0.16147 (12) | 0.30903 (11) | 0.0771 (4) | |
| O3 | 0.83221 (9) | −0.04027 (11) | 0.36362 (9) | 0.0547 (3) | |
| O4 | 0.88257 (8) | −0.10404 (11) | 0.55661 (8) | 0.0518 (3) | |
| H4B | 1.0969 (15) | 0.3317 (18) | 0.7709 (17) | 0.059 (5)* | |
| H4A | 1.1221 (15) | 0.2174 (19) | 0.6872 (16) | 0.065 (5)* | |
| H3A | 1.0192 (15) | 0.2040 (18) | 0.4898 (16) | 0.064 (5)* |
| C1 | 0.0439 (7) | 0.0438 (6) | 0.0385 (6) | 0.0005 (5) | 0.0088 (5) | 0.0079 (5) |
| C2 | 0.0448 (7) | 0.0628 (9) | 0.0619 (9) | 0.0129 (6) | 0.0101 (6) | 0.0191 (7) |
| C3 | 0.0659 (10) | 0.0565 (9) | 0.0744 (11) | 0.0243 (7) | 0.0323 (9) | 0.0124 (8) |
| C4 | 0.0738 (10) | 0.0519 (8) | 0.0533 (8) | 0.0144 (7) | 0.0272 (8) | −0.0016 (6) |
| C5 | 0.0513 (7) | 0.0510 (7) | 0.0379 (6) | 0.0061 (6) | 0.0122 (6) | −0.0011 (5) |
| C6 | 0.0409 (6) | 0.0363 (6) | 0.0334 (6) | 0.0026 (5) | 0.0118 (5) | 0.0053 (4) |
| C7 | 0.0410 (6) | 0.0395 (6) | 0.0335 (6) | 0.0019 (5) | 0.0095 (5) | −0.0001 (5) |
| C8 | 0.0572 (8) | 0.0520 (7) | 0.0299 (6) | 0.0070 (6) | 0.0089 (5) | −0.0020 (5) |
| C9 | 0.0504 (7) | 0.0528 (7) | 0.0368 (6) | 0.0087 (6) | 0.0053 (5) | 0.0017 (5) |
| C10 | 0.0460 (7) | 0.0396 (6) | 0.0435 (7) | 0.0020 (5) | 0.0139 (6) | 0.0008 (5) |
| C11 | 0.0503 (7) | 0.0417 (6) | 0.0352 (6) | 0.0010 (5) | 0.0130 (5) | −0.0047 (5) |
| C12 | 0.0460 (7) | 0.0416 (6) | 0.0321 (6) | 0.0010 (5) | 0.0115 (5) | 0.0005 (5) |
| C13 | 0.0599 (9) | 0.0541 (8) | 0.0621 (9) | 0.0150 (7) | 0.0131 (7) | −0.0064 (7) |
| N1 | 0.0510 (7) | 0.0649 (8) | 0.0446 (7) | −0.0082 (6) | 0.0016 (5) | −0.0002 (6) |
| N3 | 0.0479 (6) | 0.0452 (6) | 0.0318 (5) | 0.0083 (5) | 0.0114 (4) | −0.0001 (4) |
| N4 | 0.0627 (8) | 0.0625 (8) | 0.0355 (6) | 0.0192 (6) | 0.0026 (5) | −0.0050 (5) |
| O1 | 0.1008 (11) | 0.1144 (12) | 0.0473 (7) | 0.0141 (9) | −0.0148 (7) | 0.0027 (7) |
| O2 | 0.1014 (10) | 0.0528 (7) | 0.0671 (8) | −0.0131 (6) | 0.0094 (7) | −0.0113 (6) |
| O3 | 0.0669 (7) | 0.0634 (6) | 0.0391 (5) | 0.0162 (5) | 0.0237 (5) | 0.0062 (4) |
| O4 | 0.0522 (6) | 0.0648 (6) | 0.0372 (5) | 0.0209 (5) | 0.0111 (4) | 0.0079 (4) |
| C1—C2 | 1.382 (2) | C9—C10 | 1.4137 (19) |
| C1—C6 | 1.3880 (17) | C9—H9 | 0.9300 |
| C1—N1 | 1.4682 (18) | C10—C11 | 1.3688 (18) |
| C2—C3 | 1.379 (3) | C10—C13 | 1.4985 (19) |
| C2—H2 | 0.9300 | C11—C12 | 1.4101 (18) |
| C3—C4 | 1.372 (2) | C11—H11 | 0.9300 |
| C3—H3 | 0.9300 | C12—N4 | 1.3295 (17) |
| C4—C5 | 1.385 (2) | C12—N3 | 1.3505 (16) |
| C4—H4 | 0.9300 | C13—H13A | 0.9600 |
| C5—C6 | 1.3872 (18) | C13—H13B | 0.9600 |
| C5—H5 | 0.9300 | C13—H13C | 0.9600 |
| C6—C7 | 1.5122 (17) | N1—O2 | 1.2165 (18) |
| C7—O3 | 1.2372 (15) | N1—O1 | 1.2203 (17) |
| C7—O4 | 1.2585 (15) | N3—H3A | 0.933 (18) |
| C8—C9 | 1.3510 (19) | N4—H4B | 0.871 (19) |
| C8—N3 | 1.3526 (17) | N4—H4A | 0.923 (19) |
| C8—H8 | 0.9300 | ||
| C2—C1—C6 | 122.54 (13) | C10—C9—H9 | 120.3 |
| C2—C1—N1 | 117.55 (13) | C11—C10—C9 | 118.75 (12) |
| C6—C1—N1 | 119.83 (12) | C11—C10—C13 | 121.87 (12) |
| C3—C2—C1 | 118.83 (14) | C9—C10—C13 | 119.37 (12) |
| C3—C2—H2 | 120.6 | C10—C11—C12 | 120.57 (12) |
| C1—C2—H2 | 120.6 | C10—C11—H11 | 119.7 |
| C4—C3—C2 | 120.27 (14) | C12—C11—H11 | 119.7 |
| C4—C3—H3 | 119.9 | N4—C12—N3 | 118.01 (12) |
| C2—C3—H3 | 119.9 | N4—C12—C11 | 123.81 (12) |
| C3—C4—C5 | 120.01 (15) | N3—C12—C11 | 118.18 (11) |
| C3—C4—H4 | 120.0 | C10—C13—H13A | 109.5 |
| C5—C4—H4 | 120.0 | C10—C13—H13B | 109.5 |
| C4—C5—C6 | 121.40 (13) | H13A—C13—H13B | 109.5 |
| C4—C5—H5 | 119.3 | C10—C13—H13C | 109.5 |
| C6—C5—H5 | 119.3 | H13A—C13—H13C | 109.5 |
| C5—C6—C1 | 116.90 (11) | H13B—C13—H13C | 109.5 |
| C5—C6—C7 | 119.41 (11) | O2—N1—O1 | 124.08 (15) |
| C1—C6—C7 | 123.29 (11) | O2—N1—C1 | 118.07 (12) |
| O3—C7—O4 | 125.59 (12) | O1—N1—C1 | 117.84 (14) |
| O3—C7—C6 | 117.46 (11) | C12—N3—C8 | 122.02 (11) |
| O4—C7—C6 | 116.88 (10) | C12—N3—H3A | 120.8 (11) |
| C9—C8—N3 | 121.08 (12) | C8—N3—H3A | 117.1 (11) |
| C9—C8—H8 | 119.5 | C12—N4—H4B | 119.2 (11) |
| N3—C8—H8 | 119.5 | C12—N4—H4A | 118.3 (11) |
| C8—C9—C10 | 119.39 (12) | H4B—N4—H4A | 122.2 (16) |
| C8—C9—H9 | 120.3 | ||
| C6—C1—C2—C3 | −1.2 (2) | N3—C8—C9—C10 | −0.6 (2) |
| N1—C1—C2—C3 | 175.64 (14) | C8—C9—C10—C11 | 0.4 (2) |
| C1—C2—C3—C4 | −0.8 (2) | C8—C9—C10—C13 | −178.59 (14) |
| C2—C3—C4—C5 | 1.4 (3) | C9—C10—C11—C12 | −0.1 (2) |
| C3—C4—C5—C6 | 0.0 (2) | C13—C10—C11—C12 | 178.84 (13) |
| C4—C5—C6—C1 | −1.9 (2) | C10—C11—C12—N4 | −179.53 (14) |
| C4—C5—C6—C7 | 171.12 (13) | C10—C11—C12—N3 | 0.1 (2) |
| C2—C1—C6—C5 | 2.48 (19) | C2—C1—N1—O2 | −137.16 (16) |
| N1—C1—C6—C5 | −174.27 (12) | C6—C1—N1—O2 | 39.75 (19) |
| C2—C1—C6—C7 | −170.21 (12) | C2—C1—N1—O1 | 41.9 (2) |
| N1—C1—C6—C7 | 13.05 (18) | C6—C1—N1—O1 | −141.19 (15) |
| C5—C6—C7—O3 | −134.09 (13) | N4—C12—N3—C8 | 179.29 (13) |
| C1—C6—C7—O3 | 38.42 (18) | C11—C12—N3—C8 | −0.33 (19) |
| C5—C6—C7—O4 | 43.01 (17) | C9—C8—N3—C12 | 0.6 (2) |
| C1—C6—C7—O4 | −144.48 (13) |
| H··· | ||||
| N3—H3 | 0.933 (18) | 1.752 (19) | 2.6746 (16) | 169.5 (17) |
| N4—H4 | 0.923 (19) | 1.972 (19) | 2.8734 (18) | 164.9 (17) |
| N4—H4 | 0.871 (19) | 2.033 (19) | 2.8937 (16) | 169.7 (18) |
| C11—H11···O3iii | 0.93 | 2.58 | 3.3624 (16) | 142 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.933 (18) | 1.752 (19) | 2.6746 (16) | 169.5 (17) |
| N4—H4 | 0.923 (19) | 1.972 (19) | 2.8734 (18) | 164.9 (17) |
| N4—H4 | 0.871 (19) | 2.033 (19) | 2.8937 (16) | 169.7 (18) |
| C11—H11⋯O3iii | 0.93 | 2.58 | 3.3624 (16) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) .