Literature DB >> 23284498

2-Amino-5-chloro-pyridinium 4-amino-benzoate.

V Kannan1, P Sugumar, S Brahadeeswaran, M N Ponnuswamy.   

Abstract

In the title molecular salt, C(5)H(6)ClN(2) (+)·C(7)H(6)NO(2) (-), the cations and anions are connected by cation-to-anion and anion-to-anion N-H⋯O hydrogen bonds into a three-dimensional network. The dihedral angle between the ring and the CO(2) group in the anion is 7.14 (7)°.

Entities:  

Year:  2012        PMID: 23284498      PMCID: PMC3515278          DOI: 10.1107/S1600536812043085

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to chloro­pyridinium derivatives, see: Brahadeeswaran et al. (2006 ▶); Tomaru et al. (1991 ▶). For N—H⋯O hydrogen bonds, see: Blessing (1986 ▶); Brown (1976 ▶).

Experimental

Crystal data

C5H6ClN2C7H6NO2 M = 265.70 Monoclinic, a = 6.9879 (4) Å b = 22.0074 (13) Å c = 8.0554 (5) Å β = 92.796 (1)° V = 1237.33 (13) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.20 × 0.19 × 0.18 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.941, T max = 0.946 12108 measured reflections 3086 independent reflections 2642 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.112 S = 1.04 3086 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043085/bt6844sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043085/bt6844Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043085/bt6844Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6ClN2+·C7H6NO2F(000) = 552
Mr = 265.70Dx = 1.426 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2642 reflections
a = 6.9879 (4) Åθ = 1.9–28.4°
b = 22.0074 (13) ŵ = 0.31 mm1
c = 8.0554 (5) ÅT = 293 K
β = 92.796 (1)°Block, white crystalline
V = 1237.33 (13) Å30.20 × 0.19 × 0.18 mm
Z = 4
Bruker APEXII area-detector diffractometer3086 independent reflections
Radiation source: fine-focus sealed tube2642 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω scanθmax = 28.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.941, Tmax = 0.946k = −29→29
12108 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0572P)2 + 0.3359P] where P = (Fo2 + 2Fc2)/3
3086 reflections(Δ/σ)max = 0.001
179 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.3159 (2)0.04218 (6)0.77668 (17)0.0407 (3)
C30.3355 (2)0.09763 (7)0.6908 (2)0.0479 (3)
H30.23720.12610.68890.057*
C40.4987 (2)0.10919 (7)0.61093 (19)0.0486 (4)
H40.51330.14600.55630.058*
C50.6448 (2)0.06560 (7)0.61107 (17)0.0431 (3)
C60.6216 (2)0.01208 (6)0.69117 (17)0.0406 (3)
H60.7173−0.01730.69110.049*
C70.71327 (19)0.12257 (6)1.01810 (16)0.0359 (3)
C80.71041 (18)0.18462 (6)0.94334 (16)0.0346 (3)
C90.87870 (19)0.21125 (6)0.89231 (17)0.0389 (3)
H90.99370.19020.90660.047*
C100.87784 (19)0.26832 (6)0.82089 (17)0.0407 (3)
H100.99230.28540.78950.049*
C110.70654 (19)0.30071 (6)0.79533 (16)0.0371 (3)
C120.5373 (2)0.27406 (6)0.84646 (18)0.0412 (3)
H120.42190.29480.83110.049*
C130.54024 (19)0.21735 (6)0.91937 (17)0.0390 (3)
H130.42640.20060.95330.047*
N10.45860 (17)0.00142 (5)0.77144 (14)0.0385 (3)
H10.4461−0.03290.82100.046*
N20.1643 (2)0.02799 (7)0.86228 (19)0.0545 (4)
N30.7058 (2)0.35808 (6)0.72634 (18)0.0477 (3)
O10.86491 (14)0.09238 (5)1.02101 (14)0.0471 (3)
O20.55877 (14)0.10303 (4)1.07566 (14)0.0483 (3)
Cl10.85224 (7)0.07952 (2)0.50832 (6)0.06516 (16)
H3A0.598 (3)0.3696 (9)0.680 (2)0.049 (5)*
H2A0.155 (3)−0.0086 (11)0.909 (2)0.067 (6)*
H2B0.078 (3)0.0551 (10)0.877 (3)0.069 (6)*
H3B0.808 (3)0.3657 (9)0.676 (3)0.062 (5)*
U11U22U33U12U13U23
C20.0455 (7)0.0342 (6)0.0423 (7)0.0007 (5)0.0014 (5)−0.0021 (5)
C30.0525 (8)0.0348 (7)0.0557 (8)0.0043 (6)−0.0035 (7)0.0047 (6)
C40.0605 (9)0.0358 (7)0.0488 (8)−0.0081 (6)−0.0060 (7)0.0091 (6)
C50.0458 (7)0.0437 (7)0.0395 (7)−0.0108 (6)−0.0008 (5)0.0013 (6)
C60.0414 (7)0.0371 (7)0.0432 (7)−0.0019 (5)0.0007 (5)−0.0009 (5)
C70.0370 (6)0.0310 (6)0.0397 (6)0.0004 (5)0.0026 (5)−0.0017 (5)
C80.0366 (6)0.0310 (6)0.0364 (6)−0.0006 (5)0.0032 (5)−0.0013 (5)
C90.0330 (6)0.0389 (7)0.0447 (7)0.0017 (5)0.0026 (5)0.0013 (5)
C100.0349 (6)0.0418 (7)0.0457 (7)−0.0061 (5)0.0048 (5)0.0027 (6)
C110.0417 (7)0.0319 (6)0.0377 (6)−0.0027 (5)0.0014 (5)−0.0015 (5)
C120.0366 (7)0.0360 (6)0.0512 (8)0.0044 (5)0.0050 (6)0.0026 (6)
C130.0346 (6)0.0359 (6)0.0470 (7)−0.0019 (5)0.0071 (5)0.0008 (5)
N10.0444 (6)0.0297 (5)0.0414 (6)−0.0003 (4)0.0041 (5)0.0025 (4)
N20.0529 (8)0.0424 (7)0.0698 (9)0.0093 (6)0.0199 (7)0.0069 (6)
N30.0450 (7)0.0381 (6)0.0600 (8)−0.0030 (5)0.0026 (6)0.0104 (6)
O10.0389 (5)0.0374 (5)0.0654 (7)0.0055 (4)0.0072 (5)0.0045 (4)
O20.0403 (5)0.0372 (5)0.0686 (7)0.0042 (4)0.0144 (5)0.0137 (5)
Cl10.0575 (3)0.0704 (3)0.0685 (3)−0.0175 (2)0.0128 (2)0.0112 (2)
C2—N21.329 (2)C8—C131.3956 (18)
C2—N11.3433 (18)C9—C101.3814 (19)
C2—C31.413 (2)C9—H90.9300
C3—C41.360 (2)C10—C111.3997 (19)
C3—H30.9300C10—H100.9300
C4—C51.401 (2)C11—N31.3794 (18)
C4—H40.9300C11—C121.3997 (19)
C5—C61.357 (2)C12—C131.3791 (19)
C5—Cl11.7312 (15)C12—H120.9300
C6—N11.3573 (17)C13—H130.9300
C6—H60.9300N1—H10.8600
C7—O11.2500 (16)N2—H2A0.89 (2)
C7—O21.2706 (16)N2—H2B0.86 (2)
C7—C81.4921 (18)N3—H3A0.862 (19)
C8—C91.3937 (18)N3—H3B0.86 (2)
N2—C2—N1118.11 (13)C8—C9—H9119.4
N2—C2—C3123.76 (14)C9—C10—C11120.70 (12)
N1—C2—C3118.14 (13)C9—C10—H10119.6
C4—C3—C2119.78 (14)C11—C10—H10119.6
C4—C3—H3120.1N3—C11—C10120.77 (13)
C2—C3—H3120.1N3—C11—C12121.04 (13)
C3—C4—C5119.95 (13)C10—C11—C12118.16 (12)
C3—C4—H4120.0C13—C12—C11120.62 (12)
C5—C4—H4120.0C13—C12—H12119.7
C6—C5—C4119.40 (14)C11—C12—H12119.7
C6—C5—Cl1120.23 (12)C12—C13—C8121.38 (12)
C4—C5—Cl1120.37 (11)C12—C13—H13119.3
C5—C6—N1119.95 (13)C8—C13—H13119.3
C5—C6—H6120.0C2—N1—C6122.74 (12)
N1—C6—H6120.0C2—N1—H1118.6
O1—C7—O2123.22 (12)C6—N1—H1118.6
O1—C7—C8119.25 (12)C2—N2—H2A120.4 (13)
O2—C7—C8117.53 (11)C2—N2—H2B119.4 (14)
C9—C8—C13117.89 (12)H2A—N2—H2B120.1 (19)
C9—C8—C7120.59 (12)C11—N3—H3A115.5 (12)
C13—C8—C7121.51 (12)C11—N3—H3B112.7 (14)
C10—C9—C8121.23 (12)H3A—N3—H3B117.8 (18)
C10—C9—H9119.4
N2—C2—C3—C4177.79 (15)C7—C8—C9—C10179.13 (12)
N1—C2—C3—C4−2.3 (2)C8—C9—C10—C11−1.0 (2)
C2—C3—C4—C51.4 (2)C9—C10—C11—N3179.01 (13)
C3—C4—C5—C60.1 (2)C9—C10—C11—C121.0 (2)
C3—C4—C5—Cl1179.43 (12)N3—C11—C12—C13−178.26 (13)
C4—C5—C6—N1−0.6 (2)C10—C11—C12—C13−0.2 (2)
Cl1—C5—C6—N1−179.96 (10)C11—C12—C13—C8−0.5 (2)
O1—C7—C8—C9−6.38 (19)C9—C8—C13—C120.5 (2)
O2—C7—C8—C9173.83 (12)C7—C8—C13—C12−178.37 (13)
O1—C7—C8—C13172.44 (13)N2—C2—N1—C6−178.27 (13)
O2—C7—C8—C13−7.35 (19)C3—C2—N1—C61.8 (2)
C13—C8—C9—C100.3 (2)C5—C6—N1—C2−0.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.762.6135 (15)175
N2—H2A···O1i0.89 (2)1.94 (2)2.8216 (18)172.1 (19)
N2—H2B···O1ii0.86 (2)2.10 (2)2.8776 (17)150.3 (19)
N3—H3A···O1iii0.862 (19)2.19 (2)3.0357 (18)167.4 (17)
N3—H3B···O2iv0.86 (2)2.08 (2)2.9291 (18)171 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.861.762.6135 (15)175
N2—H2A⋯O1i 0.89 (2)1.94 (2)2.8216 (18)172.1 (19)
N2—H2B⋯O1ii 0.86 (2)2.10 (2)2.8776 (17)150.3 (19)
N3—H3A⋯O1iii 0.862 (19)2.19 (2)3.0357 (18)167.4 (17)
N3—H3B⋯O2iv 0.86 (2)2.08 (2)2.9291 (18)171 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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