| Literature DB >> 23284507 |
Kaliyaperumal Thanigaimani1, Abbas Farhadikoutenaei, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
In the 2-amino-benzoate anion of the title salt, C(6)H(9)N(2) (+)·C(7)H(6)NO(2) (-), an intra-molecular N-H⋯O hydrogen bond is observed. The dihedral angle between the ring and the CO(2) group is 8.41 (13)°. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The ion pairs are further connected via N-H⋯O hydrogen bonds, resulting in a donor-donor-acceptor-acceptor (DDAA) array of quadruple hydrogen bonds. The crystal structure also features a weak N-H⋯O hydrogen bond and a C-H⋯π inter-action, resulting in a three-dimensional network.Entities:
Year: 2012 PMID: 23284507 PMCID: PMC3515287 DOI: 10.1107/S1600536812043243
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H6NO2− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4117 reflections |
| θ = 2.6–32.5° | |
| µ = 0.09 mm−1 | |
| β = 129.850 (4)° | Block, pink |
| 0.35 × 0.33 × 0.14 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 2707 independent reflections |
| Radiation source: fine-focus sealed tube | 2361 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 11650 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2707 reflections | (Δ/σ)max < 0.001 |
| 184 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | −0.05463 (13) | 0.58465 (7) | 0.37647 (10) | 0.0151 (2) | |
| N2 | −0.25399 (14) | 0.50164 (8) | 0.16340 (12) | 0.0204 (2) | |
| C1 | 0.11839 (16) | 0.60745 (8) | 0.50265 (12) | 0.0151 (2) | |
| H1A | 0.1274 | 0.6549 | 0.5629 | 0.018* | |
| C2 | 0.27885 (15) | 0.56356 (8) | 0.54419 (12) | 0.0155 (2) | |
| C3 | 0.25605 (16) | 0.49221 (8) | 0.45170 (13) | 0.0171 (2) | |
| H3A | 0.3639 | 0.4586 | 0.4784 | 0.020* | |
| C4 | 0.08252 (16) | 0.47011 (9) | 0.32426 (13) | 0.0177 (3) | |
| H4A | 0.0711 | 0.4225 | 0.2631 | 0.021* | |
| C5 | −0.07917 (16) | 0.51858 (8) | 0.28449 (12) | 0.0159 (2) | |
| C6 | 0.47064 (16) | 0.59045 (9) | 0.68135 (13) | 0.0196 (3) | |
| H6A | 0.4574 | 0.6181 | 0.7487 | 0.029* | |
| H6B | 0.5289 | 0.6378 | 0.6607 | 0.029* | |
| H6C | 0.5502 | 0.5330 | 0.7238 | 0.029* | |
| O1 | 0.43909 (11) | 0.88549 (6) | 0.58761 (9) | 0.0185 (2) | |
| O2 | 0.63811 (11) | 0.83318 (6) | 0.81350 (9) | 0.0196 (2) | |
| N3 | 0.50078 (14) | 0.75894 (8) | 0.93299 (11) | 0.0194 (2) | |
| C7 | 0.12951 (16) | 0.86387 (9) | 0.57403 (13) | 0.0182 (2) | |
| H7A | 0.1169 | 0.8984 | 0.5008 | 0.022* | |
| C8 | −0.03024 (16) | 0.84480 (9) | 0.55754 (13) | 0.0205 (3) | |
| H8A | −0.1507 | 0.8658 | 0.4747 | 0.025* | |
| C9 | −0.01034 (16) | 0.79390 (9) | 0.66560 (13) | 0.0194 (3) | |
| H9A | −0.1190 | 0.7788 | 0.6550 | 0.023* | |
| C10 | 0.16495 (16) | 0.76523 (9) | 0.78755 (13) | 0.0171 (2) | |
| H10A | 0.1751 | 0.7310 | 0.8599 | 0.021* | |
| C11 | 0.32976 (15) | 0.78581 (8) | 0.80692 (12) | 0.0149 (2) | |
| C12 | 0.31006 (15) | 0.83401 (8) | 0.69541 (12) | 0.0147 (2) | |
| C13 | 0.47372 (15) | 0.85226 (8) | 0.69945 (12) | 0.0150 (2) | |
| H1 | −0.280 (2) | 0.4597 (12) | 0.0936 (19) | 0.032 (4)* | |
| H2 | 0.500 (2) | 0.7164 (12) | 0.9882 (18) | 0.027 (4)* | |
| H3 | 0.605 (2) | 0.7676 (13) | 0.9397 (18) | 0.034 (4)* | |
| H4 | −0.165 (2) | 0.6175 (13) | 0.3487 (19) | 0.038 (5)* | |
| H5 | −0.354 (2) | 0.5383 (12) | 0.1417 (18) | 0.031 (4)* |
| N1 | 0.0141 (5) | 0.0158 (5) | 0.0159 (5) | 0.0000 (4) | 0.0099 (4) | −0.0003 (4) |
| N2 | 0.0149 (5) | 0.0239 (5) | 0.0183 (5) | −0.0009 (4) | 0.0088 (4) | −0.0060 (4) |
| C1 | 0.0171 (5) | 0.0140 (5) | 0.0147 (5) | −0.0024 (4) | 0.0104 (5) | −0.0017 (4) |
| C2 | 0.0150 (5) | 0.0156 (5) | 0.0153 (5) | −0.0013 (4) | 0.0094 (5) | 0.0012 (4) |
| C3 | 0.0158 (5) | 0.0169 (5) | 0.0201 (6) | 0.0007 (4) | 0.0123 (5) | 0.0013 (5) |
| C4 | 0.0190 (6) | 0.0167 (5) | 0.0191 (6) | −0.0009 (4) | 0.0130 (5) | −0.0028 (5) |
| C5 | 0.0163 (5) | 0.0162 (5) | 0.0156 (5) | −0.0018 (4) | 0.0105 (5) | −0.0002 (4) |
| C6 | 0.0156 (5) | 0.0200 (6) | 0.0184 (6) | −0.0007 (4) | 0.0087 (5) | −0.0018 (5) |
| O1 | 0.0187 (4) | 0.0220 (4) | 0.0151 (4) | −0.0006 (3) | 0.0109 (4) | 0.0014 (3) |
| O2 | 0.0132 (4) | 0.0241 (5) | 0.0180 (4) | −0.0006 (3) | 0.0084 (4) | 0.0046 (3) |
| N3 | 0.0150 (5) | 0.0256 (5) | 0.0152 (5) | −0.0005 (4) | 0.0085 (4) | 0.0043 (4) |
| C7 | 0.0179 (5) | 0.0189 (6) | 0.0146 (5) | 0.0009 (4) | 0.0090 (5) | 0.0006 (5) |
| C8 | 0.0135 (5) | 0.0250 (6) | 0.0164 (6) | 0.0020 (4) | 0.0065 (5) | −0.0009 (5) |
| C9 | 0.0148 (5) | 0.0219 (6) | 0.0216 (6) | −0.0031 (4) | 0.0117 (5) | −0.0053 (5) |
| C10 | 0.0185 (5) | 0.0173 (6) | 0.0176 (6) | −0.0032 (4) | 0.0125 (5) | −0.0025 (4) |
| C11 | 0.0147 (5) | 0.0138 (5) | 0.0136 (5) | −0.0010 (4) | 0.0079 (5) | −0.0027 (4) |
| C12 | 0.0139 (5) | 0.0142 (5) | 0.0144 (5) | −0.0017 (4) | 0.0084 (5) | −0.0025 (4) |
| C13 | 0.0156 (5) | 0.0124 (5) | 0.0153 (5) | −0.0010 (4) | 0.0091 (5) | −0.0013 (4) |
| N1—C5 | 1.3498 (15) | O1—C13 | 1.2672 (14) |
| N1—C1 | 1.3660 (14) | O2—C13 | 1.2651 (14) |
| N1—H4 | 0.959 (18) | N3—C11 | 1.3717 (15) |
| N2—C5 | 1.3356 (15) | N3—H2 | 0.897 (17) |
| N2—H1 | 0.926 (18) | N3—H3 | 0.923 (18) |
| N2—H5 | 0.933 (17) | C7—C8 | 1.3821 (17) |
| C1—C2 | 1.3664 (16) | C7—C12 | 1.4064 (16) |
| C1—H1A | 0.9500 | C7—H7A | 0.9500 |
| C2—C3 | 1.4108 (17) | C8—C9 | 1.3966 (18) |
| C2—C6 | 1.5077 (16) | C8—H8A | 0.9500 |
| C3—C4 | 1.3716 (16) | C9—C10 | 1.3793 (16) |
| C3—H3A | 0.9500 | C9—H9A | 0.9500 |
| C4—C5 | 1.4125 (16) | C10—C11 | 1.4131 (16) |
| C4—H4A | 0.9500 | C10—H10A | 0.9500 |
| C6—H6A | 0.9800 | C11—C12 | 1.4153 (16) |
| C6—H6B | 0.9800 | C12—C13 | 1.5029 (15) |
| C6—H6C | 0.9800 | ||
| C5—N1—C1 | 122.86 (10) | H6B—C6—H6C | 109.5 |
| C5—N1—H4 | 117.1 (11) | C11—N3—H2 | 117.4 (10) |
| C1—N1—H4 | 120.0 (11) | C11—N3—H3 | 117.0 (11) |
| C5—N2—H1 | 122.7 (10) | H2—N3—H3 | 121.8 (15) |
| C5—N2—H5 | 119.6 (10) | C8—C7—C12 | 122.28 (11) |
| H1—N2—H5 | 117.2 (15) | C8—C7—H7A | 118.9 |
| N1—C1—C2 | 121.54 (11) | C12—C7—H7A | 118.9 |
| N1—C1—H1A | 119.2 | C7—C8—C9 | 118.44 (11) |
| C2—C1—H1A | 119.2 | C7—C8—H8A | 120.8 |
| C1—C2—C3 | 116.59 (10) | C9—C8—H8A | 120.8 |
| C1—C2—C6 | 121.72 (11) | C10—C9—C8 | 120.90 (11) |
| C3—C2—C6 | 121.68 (10) | C10—C9—H9A | 119.6 |
| C4—C3—C2 | 121.81 (11) | C8—C9—H9A | 119.6 |
| C4—C3—H3A | 119.1 | C9—C10—C11 | 121.22 (11) |
| C2—C3—H3A | 119.1 | C9—C10—H10A | 119.4 |
| C3—C4—C5 | 119.61 (11) | C11—C10—H10A | 119.4 |
| C3—C4—H4A | 120.2 | N3—C11—C10 | 118.55 (11) |
| C5—C4—H4A | 120.2 | N3—C11—C12 | 123.23 (10) |
| N2—C5—N1 | 118.38 (10) | C10—C11—C12 | 118.22 (10) |
| N2—C5—C4 | 124.05 (11) | C7—C12—C11 | 118.86 (10) |
| N1—C5—C4 | 117.55 (10) | C7—C12—C13 | 118.47 (10) |
| C2—C6—H6A | 109.5 | C11—C12—C13 | 122.65 (10) |
| C2—C6—H6B | 109.5 | O2—C13—O1 | 123.53 (10) |
| H6A—C6—H6B | 109.5 | O2—C13—C12 | 118.48 (10) |
| C2—C6—H6C | 109.5 | O1—C13—C12 | 117.99 (10) |
| H6A—C6—H6C | 109.5 | ||
| C5—N1—C1—C2 | −0.49 (17) | C9—C10—C11—N3 | 177.35 (11) |
| N1—C1—C2—C3 | −1.33 (17) | C9—C10—C11—C12 | −2.10 (17) |
| N1—C1—C2—C6 | 178.25 (11) | C8—C7—C12—C11 | −2.35 (18) |
| C1—C2—C3—C4 | 2.07 (17) | C8—C7—C12—C13 | 175.98 (11) |
| C6—C2—C3—C4 | −177.52 (11) | N3—C11—C12—C7 | −176.04 (11) |
| C2—C3—C4—C5 | −1.02 (18) | C10—C11—C12—C7 | 3.38 (16) |
| C1—N1—C5—N2 | −179.68 (11) | N3—C11—C12—C13 | 5.71 (18) |
| C1—N1—C5—C4 | 1.58 (16) | C10—C11—C12—C13 | −174.87 (10) |
| C3—C4—C5—N2 | −179.47 (11) | C7—C12—C13—O2 | 173.86 (10) |
| C3—C4—C5—N1 | −0.81 (17) | C11—C12—C13—O2 | −7.88 (17) |
| C12—C7—C8—C9 | −0.13 (18) | C7—C12—C13—O1 | −6.58 (16) |
| C7—C8—C9—C10 | 1.51 (18) | C11—C12—C13—O1 | 171.69 (10) |
| C8—C9—C10—C11 | −0.38 (18) |
| H··· | ||||
| N3—H3···O2 | 0.92 (2) | 1.97 (2) | 2.6734 (18) | 131.8 (15) |
| N2—H1···O1i | 0.926 (18) | 1.982 (18) | 2.8561 (14) | 157 (2) |
| N3—H2···O1ii | 0.897 (17) | 2.159 (18) | 3.0445 (14) | 168.7 (14) |
| N1—H4···O2iii | 0.959 (18) | 1.723 (18) | 2.6776 (13) | 172.7 (17) |
| N2—H5···O1iii | 0.933 (17) | 1.899 (18) | 2.8305 (14) | 176.8 (16) |
| C1—H1 | 0.95 | 2.58 | 3.5094 (13) | 165 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C7–C12 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3⋯O2 | 0.92 (2) | 1.97 (2) | 2.6734 (18) | 131.8 (15) |
| N2—H1⋯O1i | 0.926 (18) | 1.982 (18) | 2.8561 (14) | 157 (2) |
| N3—H2⋯O1ii | 0.897 (17) | 2.159 (18) | 3.0445 (14) | 168.7 (14) |
| N1—H4⋯O2iii | 0.959 (18) | 1.723 (18) | 2.6776 (13) | 172.7 (17) |
| N2—H5⋯O1iii | 0.933 (17) | 1.899 (18) | 2.8305 (14) | 176.8 (16) |
| C1—H1 | 0.95 | 2.58 | 3.5094 (13) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) .