Literature DB >> 29104947

Improvements in protein production in mammalian cells from targeted metabolic engineering.

Anne Richelle1,2, Nathan E Lewis1,2.   

Abstract

Bioprocess optimization has yielded powerful clones for biotherapeutic production. However, new genomic technologies allow more targeted approaches to cell line development. Here we review efforts to enhance protein production in mammalian cells through metabolic engineering. Most efforts aimed to reduce toxic byproducts accumulation to enhance protein productivity. However, recent work highlights the possibility of regulating other desirable traits (e.g., apoptosis and glycosylation) by targeting central metabolism since these processes are interconnected. Therefore, as we further detail the pathways underlying cell growth and protein production and deploy diverse algorithms for their analysis, opportunities will arise to move beyond simple cell line designs and facilitate cell engineering strategies with complex combinations of genes that together underlie a phenotype of interest.

Entities:  

Year:  2017        PMID: 29104947      PMCID: PMC5663301          DOI: 10.1016/j.coisb.2017.05.019

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  56 in total

1.  Metabolomics-driven approach for the improvement of Chinese hamster ovary cell growth: overexpression of malate dehydrogenase II.

Authors:  William P K Chong; Satty G Reddy; Faraaz N K Yusufi; Dong-Yup Lee; Niki S C Wong; Chew Kiat Heng; Miranda G S Yap; Ying Swan Ho
Journal:  J Biotechnol       Date:  2010-04-02       Impact factor: 3.307

2.  Comparative transcriptome analysis to unveil genes affecting recombinant protein productivity in mammalian cells.

Authors:  Joon Chong Yee; Ziomara P Gerdtzen; Wei-Shou Hu
Journal:  Biotechnol Bioeng       Date:  2009-01-01       Impact factor: 4.530

3.  Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity.

Authors:  Colin Clarke; Padraig Doolan; Niall Barron; Paula Meleady; Finbarr O'Sullivan; Patrick Gammell; Mark Melville; Mark Leonard; Martin Clynes
Journal:  J Biotechnol       Date:  2011-07-27       Impact factor: 3.307

Review 4.  Next-generation genome-scale models for metabolic engineering.

Authors:  Zachary A King; Colton J Lloyd; Adam M Feist; Bernhard O Palsson
Journal:  Curr Opin Biotechnol       Date:  2015-01-07       Impact factor: 9.740

5.  Biopharmaceutical benchmarks 2014.

Authors:  Gary Walsh
Journal:  Nat Biotechnol       Date:  2014-10       Impact factor: 54.908

Review 6.  Mammalian cell protein expression for biopharmaceutical production.

Authors:  Jianwei Zhu
Journal:  Biotechnol Adv       Date:  2011-09-24       Impact factor: 14.227

7.  Proteomic profiling of a high-producing Chinese hamster ovary cell culture.

Authors:  Tyler Carlage; Marina Hincapie; Li Zang; Yelena Lyubarskaya; Helena Madden; Rohin Mhatre; William S Hancock
Journal:  Anal Chem       Date:  2009-09-01       Impact factor: 6.986

Review 8.  Analysis of omics data with genome-scale models of metabolism.

Authors:  Daniel R Hyduke; Nathan E Lewis; Bernhard Ø Palsson
Journal:  Mol Biosyst       Date:  2012-12-18

Review 9.  Enhancement of production of protein biopharmaceuticals by mammalian cell cultures: the metabolomics perspective.

Authors:  Alan J Dickson
Journal:  Curr Opin Biotechnol       Date:  2014-07-02       Impact factor: 9.740

10.  Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time.

Authors:  Julia Feichtinger; Inmaculada Hernández; Christoph Fischer; Michael Hanscho; Norbert Auer; Matthias Hackl; Vaibhav Jadhav; Martina Baumann; Peter M Krempl; Christian Schmidl; Matthias Farlik; Michael Schuster; Angelika Merkel; Andreas Sommer; Simon Heath; Daniel Rico; Christoph Bock; Gerhard G Thallinger; Nicole Borth
Journal:  Biotechnol Bioeng       Date:  2016-04-29       Impact factor: 4.530

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  10 in total

1.  Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements.

Authors:  Shangzhong Li; Seong Won Cha; Kelly Heffner; Deniz Baycin Hizal; Michael A Bowen; Raghothama Chaerkady; Robert N Cole; Vijay Tejwani; Prashant Kaushik; Michael Henry; Paula Meleady; Susan T Sharfstein; Michael J Betenbaugh; Vineet Bafna; Nathan E Lewis
Journal:  J Proteome Res       Date:  2019-05-08       Impact factor: 4.466

2.  Control of Intracellular Molecular Networks Using Algebraic Methods.

Authors:  Luis Sordo Vieira; Reinhard C Laubenbacher; David Murrugarra
Journal:  Bull Math Biol       Date:  2019-12-23       Impact factor: 1.758

Review 3.  Factors Affecting the Expression of Recombinant Protein and Improvement Strategies in Chinese Hamster Ovary Cells.

Authors:  Zheng-Mei Li; Zhen-Lin Fan; Xiao-Yin Wang; Tian-Yun Wang
Journal:  Front Bioeng Biotechnol       Date:  2022-07-04

4.  A metabolic CRISPR-Cas9 screen in Chinese hamster ovary cells identifies glutamine-sensitive genes.

Authors:  Karen Julie la Cour Karottki; Hooman Hefzi; Songyuan Li; Lasse Ebdrup Pedersen; Philipp N Spahn; Chintan Joshi; David Ruckerbauer; Juan A Hernandez Bort; Alex Thomas; Jae Seong Lee; Nicole Borth; Gyun Min Lee; Helene Faustrup Kildegaard; Nathan E Lewis
Journal:  Metab Eng       Date:  2021-04-01       Impact factor: 8.829

5.  A reference genome of the Chinese hamster based on a hybrid assembly strategy.

Authors:  Oliver Rupp; Madolyn L MacDonald; Shangzhong Li; Heena Dhiman; Shawn Polson; Sven Griep; Kelley Heffner; Inmaculada Hernandez; Karina Brinkrolf; Vaibhav Jadhav; Mojtaba Samoudi; Haiping Hao; Brewster Kingham; Alexander Goesmann; Michael J Betenbaugh; Nathan E Lewis; Nicole Borth; Kelvin H Lee
Journal:  Biotechnol Bioeng       Date:  2018-05-29       Impact factor: 4.395

6.  Combating viral contaminants in CHO cells by engineering innate immunity.

Authors:  Austin W T Chiang; Shangzhong Li; Benjamin P Kellman; Gouri Chattopadhyay; Yaqin Zhang; Chih-Chung Kuo; Jahir M Gutierrez; Faezeh Ghazi; Hana Schmeisser; Patrice Ménard; Sara Petersen Bjørn; Bjørn G Voldborg; Amy S Rosenberg; Montserrat Puig; Nathan E Lewis
Journal:  Sci Rep       Date:  2019-06-20       Impact factor: 4.379

Review 7.  Glycosylated Biotherapeutics: Immunological Effects of N-Glycolylneuraminic Acid.

Authors:  Sharon Yehuda; Vered Padler-Karavani
Journal:  Front Immunol       Date:  2020-01-23       Impact factor: 7.561

Review 8.  Advances of Glycometabolism Engineering in Chinese Hamster Ovary Cells.

Authors:  Huan-Yu Zhang; Zhen-Lin Fan; Tian-Yun Wang
Journal:  Front Bioeng Biotechnol       Date:  2021-12-02

9.  Modeling apoptosis resistance in CHO cells with CRISPR-mediated knockouts of Bak1, Bax, and Bok.

Authors:  Michael A MacDonald; Craig Barry; Teddy Groves; Verónica S Martínez; Peter P Gray; Kym Baker; Evan Shave; Stephen Mahler; Trent Munro; Esteban Marcellin; Lars K Nielsen
Journal:  Biotechnol Bioeng       Date:  2022-03-06       Impact factor: 4.395

10.  A proteomics approach to decipher a sticky CHO situation.

Authors:  Swetha Kumar; Amit Kumar; Steven Huhn; Lauren DeVine; Robert Cole; Zhimei Du; Michael Betenbaugh
Journal:  Biotechnol Bioeng       Date:  2022-05-25       Impact factor: 4.395

  10 in total

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