Literature DB >> 28044271

The application of powerful promoters to enhance gene expression in industrial microorganisms.

Shenghu Zhou1, Guocheng Du1,2, Zhen Kang1,2, Jianghua Li1, Jian Chen1,2, Huazhong Li3, Jingwen Zhou4.   

Abstract

Production of useful chemicals by industrial microorganisms has been attracting more and more attention. Microorganisms screened from their natural environment usually suffer from low productivity, low stress resistance, and accumulation of by-products. In order to overcome these disadvantages, rational engineering of microorganisms to achieve specific industrial goals has become routine. Rapid development of metabolic engineering and synthetic biology strategies provide novel methods to improve the performance of industrial microorganisms. Rational regulation of gene expression by specific promoters is essential to engineer industrial microorganisms for high-efficiency production of target chemicals. Identification, modification, and application of suitable promoters could provide powerful switches at the transcriptional level for fine-tuning of a single gene or a group of genes, which are essential for the reconstruction of pathways. In this review, the characteristics of promoters from eukaryotic, prokaryotic, and archaea microorganisms are briefly introduced. Identification of promoters based on both traditional biochemical and systems biology routes are summarized. Besides rational modification, de novo design of promoters to achieve gradient, dynamic, and logic gate regulation are also introduced. Furthermore, flexible application of static and dynamic promoters for the rational engineering of industrial microorganisms is highlighted. From the perspective of powerful promoters in industrial microorganisms, this review will provide an extensive description of how to regulate gene expression in industrial microorganisms to achieve more useful goals.

Keywords:  Combinatorial promoter; Dynamic regulation; Logic gate; Metabolic engineering; Promoter prediction; Static regulation; Synthetic biology

Mesh:

Year:  2017        PMID: 28044271     DOI: 10.1007/s11274-016-2184-3

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  98 in total

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Journal:  Syst Synth Biol       Date:  2014-08-28

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Journal:  Curr Opin Genet Dev       Date:  1996-10       Impact factor: 5.578

3.  Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes.

Authors:  Theresa Siegl; Bogdan Tokovenko; Maksym Myronovskyi; Andriy Luzhetskyy
Journal:  Metab Eng       Date:  2013-07-20       Impact factor: 9.783

4.  Multivariate modular metabolic engineering of Escherichia coli to produce resveratrol from L-tyrosine.

Authors:  Junjun Wu; Peiran Liu; Yongming Fan; Han Bao; Guocheng Du; Jingwen Zhou; Jian Chen
Journal:  J Biotechnol       Date:  2013-07-31       Impact factor: 3.307

5.  Causes and effects of N-terminal codon bias in bacterial genes.

Authors:  Daniel B Goodman; George M Church; Sriram Kosuri
Journal:  Science       Date:  2013-09-26       Impact factor: 47.728

Review 6.  Promoters and basal transcription machinery in eubacteria and eukaryotes: concepts, definitions, and analogies.

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Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

Review 7.  Engineering metabolism through dynamic control.

Authors:  Naveen Venayak; Nikolaos Anesiadis; William R Cluett; Radhakrishnan Mahadevan
Journal:  Curr Opin Biotechnol       Date:  2015-01-20       Impact factor: 9.740

Review 8.  Transcriptomics in the RNA-seq era.

Authors:  Paul A McGettigan
Journal:  Curr Opin Chem Biol       Date:  2013-01-02       Impact factor: 8.822

9.  Increased malonyl coenzyme A biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production.

Authors:  Zachary L Fowler; William W Gikandi; Mattheos A G Koffas
Journal:  Appl Environ Microbiol       Date:  2009-07-24       Impact factor: 4.792

10.  Programming gene expression with combinatorial promoters.

Authors:  Robert Sidney Cox; Michael G Surette; Michael B Elowitz
Journal:  Mol Syst Biol       Date:  2007-11-13       Impact factor: 11.429

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  6 in total

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Journal:  J Microbiol       Date:  2020-01-02       Impact factor: 3.422

2.  Biosensor-Based Multigene Pathway Optimization for Enhancing the Production of Glycolate.

Authors:  Shumin Xu; Linpei Zhang; Shenghu Zhou; Yu Deng
Journal:  Appl Environ Microbiol       Date:  2021-05-26       Impact factor: 4.792

Review 3.  Advances in biosynthesis of scopoletin.

Authors:  Bo-Tao He; Zhi-Hua Liu; Bing-Zhi Li; Ying-Jin Yuan
Journal:  Microb Cell Fact       Date:  2022-08-02       Impact factor: 6.352

4.  Enhanced production of iturin A by strengthening fatty acid synthesis modules in Bacillus amyloliquefaciens.

Authors:  Lin Gao; Menglin She; Jiao Shi; Dongbo Cai; Dong Wang; Min Xiong; Guoming Shen; Jiaming Gao; Min Zhang; Zhifan Yang; Shouwen Chen
Journal:  Front Bioeng Biotechnol       Date:  2022-09-09

5.  Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli.

Authors:  Qiang Yan; Stephen S Fong
Journal:  J Biol Eng       Date:  2017-11-01       Impact factor: 4.355

6.  Optimized expression and enhanced production of alkaline protease by genetically modified Bacillus licheniformis 2709.

Authors:  Cuixia Zhou; Huiying Zhou; Dengke Li; Huitu Zhang; Hongbin Wang; Fuping Lu
Journal:  Microb Cell Fact       Date:  2020-02-24       Impact factor: 5.328

  6 in total

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