Literature DB >> 25849637

Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra.

Daniel Franke1, Cy M Jeffries1, Dmitri I Svergun1.   

Abstract

Assessing similarity between data sets with the reduced χ(2) test requires the estimation of experimental errors, which, if incorrect, may render statistical comparisons invalid. We report a goodness-of-fit test, Correlation Map (CorMap), for assessing differences between one-dimensional spectra independently of explicit error estimates, using only data point correlations. Using small-angle X-ray scattering data, we demonstrate that CorMap maintains the power of the reduced χ(2) test; moreover, CorMap is also applicable to other physical experiments.

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Year:  2015        PMID: 25849637     DOI: 10.1038/nmeth.3358

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  9 in total

1.  Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution.

Authors:  David A Jacques; J Mitchell Guss; Dmitri I Svergun; Jill Trewhella
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-05-17

2.  Substrate-induced double sided H-bond network as a means of domain closure in 3-phosphoglycerate kinase.

Authors:  Andrea Varga; Beáta Flachner; Peter Konarev; Eva Gráczer; Judit Szabó; Dmitri Svergun; Péter Závodszky; Mária Vas
Journal:  FEBS Lett       Date:  2006-04-21       Impact factor: 4.124

Review 3.  Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

Authors:  Jill Trewhella; Wayne A Hendrickson; Gerard J Kleywegt; Andrej Sali; Mamoru Sato; Torsten Schwede; Dmitri I Svergun; John A Tainer; John Westbrook; Helen M Berman
Journal:  Structure       Date:  2013-06-04       Impact factor: 5.006

4.  Revised standards for statistical evidence.

Authors:  Valen E Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

5.  Limiting radiation damage for high-brilliance biological solution scattering: practical experience at the EMBL P12 beamline PETRAIII.

Authors:  Cy M Jeffries; Melissa A Graewert; Dmitri I Svergun; Clément E Blanchet
Journal:  J Synchrotron Radiat       Date:  2015-02-04       Impact factor: 2.616

6.  BioSAXS Sample Changer: a robotic sample changer for rapid and reliable high-throughput X-ray solution scattering experiments.

Authors:  Adam Round; Franck Felisaz; Lukas Fodinger; Alexandre Gobbo; Julien Huet; Cyril Villard; Clement E Blanchet; Petra Pernot; Sean McSweeney; Manfred Roessle; Dmitri I Svergun; Florent Cipriani
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

7.  DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering.

Authors:  Daniel Franke; Dmitri I Svergun
Journal:  J Appl Crystallogr       Date:  2009-01-24       Impact factor: 3.304

8.  Accurate assessment of mass, models and resolution by small-angle scattering.

Authors:  Robert P Rambo; John A Tainer
Journal:  Nature       Date:  2013-04-25       Impact factor: 49.962

9.  New developments in the ATSAS program package for small-angle scattering data analysis.

Authors:  Maxim V Petoukhov; Daniel Franke; Alexander V Shkumatov; Giancarlo Tria; Alexey G Kikhney; Michal Gajda; Christian Gorba; Haydyn D T Mertens; Petr V Konarev; Dmitri I Svergun
Journal:  J Appl Crystallogr       Date:  2012-03-15       Impact factor: 3.304

  9 in total
  72 in total

1.  Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations.

Authors:  Herimela Solomon-Degefa; Jan M Gebauer; Cy M Jeffries; Carolin D Freiburg; Patrick Meckelburg; Louise E Bird; Ulrich Baumann; Dmitri I Svergun; Raymond J Owens; Jörn M Werner; Elmar Behrmann; Mats Paulsson; Raimund Wagener
Journal:  J Biol Chem       Date:  2020-07-21       Impact factor: 5.157

2.  D+: software for high-resolution hierarchical modeling of solution X-ray scattering from complex structures.

Authors:  Avi Ginsburg; Tal Ben-Nun; Roi Asor; Asaf Shemesh; Lea Fink; Roee Tekoah; Yehonatan Levartovsky; Daniel Khaykelson; Raviv Dharan; Amos Fellig; Uri Raviv
Journal:  J Appl Crystallogr       Date:  2019-02-01       Impact factor: 3.304

3.  Reduction of small-angle scattering profiles to finite sets of structural invariants.

Authors:  Jérôme Houdayer; Frédéric Poitevin
Journal:  Acta Crystallogr A Found Adv       Date:  2017-06-09       Impact factor: 2.290

Review 4.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

5.  SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale.

Authors:  Vassili Piiadov; Evandro Ares de Araújo; Mario Oliveira Neto; Aldo Felix Craievich; Igor Polikarpov
Journal:  Protein Sci       Date:  2018-12-13       Impact factor: 6.725

Review 6.  Predicting data quality in biological X-ray solution scattering.

Authors:  Chenzheng Wang; Yuexia Lin; Devin Bougie; Richard E Gillilan
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-07-24       Impact factor: 7.652

7.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

8.  Homogenization Kinetics of a Nickel-based Superalloy Produced by Powder Bed Fusion Laser Sintering.

Authors:  Fan Zhang; Lyle E Levine; Andrew J Allen; Carelyn E Campbell; Eric A Lass; Sudha Cheruvathur; Mark R Stoudt; Maureen E Williams; Yaakov Idell
Journal:  Scr Mater       Date:  2017-01-26       Impact factor: 5.611

Review 9.  Determination of protein oligomeric structure from small-angle X-ray scattering.

Authors:  David A Korasick; John J Tanner
Journal:  Protein Sci       Date:  2018-02-10       Impact factor: 6.725

10.  Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3, and ESX-5 Type VII Secretion Systems.

Authors:  Anne T Tuukkanen; Diana Freire; Sum Chan; Mark A Arbing; Robert W Reed; Timothy J Evans; Grasilda Zenkeviciutė; Jennifer Kim; Sara Kahng; Michael R Sawaya; Catherine T Chaton; Matthias Wilmanns; David Eisenberg; Annabel H A Parret; Konstantin V Korotkov
Journal:  J Mol Biol       Date:  2018-11-10       Impact factor: 5.469

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