Literature DB >> 32719005

Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations.

Herimela Solomon-Degefa1, Jan M Gebauer2, Cy M Jeffries3, Carolin D Freiburg1, Patrick Meckelburg2, Louise E Bird4,5, Ulrich Baumann2, Dmitri I Svergun3, Raymond J Owens4,5, Jörn M Werner6, Elmar Behrmann2,7, Mats Paulsson1,8,9, Raimund Wagener10,8,9.   

Abstract

Collagen VI is a ubiquitous heterotrimeric protein of the extracellular matrix (ECM) that plays an essential role in the proper maintenance of skeletal muscle. Mutations in collagen VI lead to a spectrum of congenital myopathies, from the mild Bethlem myopathy to the severe Ullrich congenital muscular dystrophy. Collagen VI contains only a short triple helix and consists primarily of von Willebrand factor type A (VWA) domains, protein-protein interaction modules found in a range of ECM proteins. Disease-causing mutations occur commonly in the VWA domains, and the second VWA domain of the α3 chain, the N2 domain, harbors several such mutations. Here, we investigate structure-function relationships of the N2 mutations to shed light on their possible myopathy mechanisms. We determined the X-ray crystal structure of N2, combined with monitoring secretion efficiency in cell culture of selected N2 single-domain mutants, finding that mutations located within the central core of the domain severely affect secretion efficiency. In longer α3 chain constructs, spanning N6-N3, small-angle X-ray scattering demonstrates that the tandem VWA array has a modular architecture and samples multiple conformations in solution. Single-particle EM confirmed the presence of multiple conformations. Structural adaptability appears intrinsic to the VWA domain region of collagen VI α3 and has implications for binding interactions and modulating stiffness within the ECM.
© 2020 Solomon-Degefa et al.

Entities:  

Keywords:  VWA domain; collagen; collagen VI; crystallography; electron microscopy (EM); extracellular matrix; extracellular matrix protein; muscular dystrophy; myopathy; single-particle EM; single-particle analysis; small-angle X-ray scattering (SAXS)

Year:  2020        PMID: 32719005      PMCID: PMC7476709          DOI: 10.1074/jbc.RA120.014865

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  72 in total

1.  Global rigid body modeling of macromolecular complexes against small-angle scattering data.

Authors:  Maxim V Petoukhov; Dmitri I Svergun
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

2.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

3.  Recessive COL6A2 C-globular missense mutations in Ullrich congenital muscular dystrophy: role of the C2a splice variant.

Authors:  Rui-Zhu Zhang; Yaqun Zou; Te-Cheng Pan; Dessislava Markova; Andrzej Fertala; Ying Hu; Stefano Squarzoni; Umbertina Conti Reed; Suely K N Marie; Carsten G Bönnemann; Mon-Li Chu
Journal:  J Biol Chem       Date:  2010-01-27       Impact factor: 5.157

4.  A new twist in the collagen story--the type VI segmented supercoil.

Authors:  C Knupp; J M Squire
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

Review 5.  Collagen VI related muscle disorders.

Authors:  A K Lampe; K M D Bushby
Journal:  J Med Genet       Date:  2005-09       Impact factor: 6.318

6.  Shear-induced unfolding activates von Willebrand factor A2 domain for proteolysis.

Authors:  C Baldauf; R Schneppenheim; W Stacklies; T Obser; A Pieconka; S Schneppenheim; U Budde; J Zhou; F Gräter
Journal:  J Thromb Haemost       Date:  2009-10-08       Impact factor: 5.824

7.  Collagen VI, conformation of A-domain arrays and microfibril architecture.

Authors:  Nicola Beecher; Alan M Roseman; Thomas A Jowitt; Richard Berry; Helen Troilo; Richard A Kammerer; C Adrian Shuttleworth; Cay M Kielty; Clair Baldock
Journal:  J Biol Chem       Date:  2011-09-09       Impact factor: 5.157

8.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  New developments in the ATSAS program package for small-angle scattering data analysis.

Authors:  Maxim V Petoukhov; Daniel Franke; Alexander V Shkumatov; Giancarlo Tria; Alexey G Kikhney; Michal Gajda; Christian Gorba; Haydyn D T Mertens; Petr V Konarev; Dmitri I Svergun
Journal:  J Appl Crystallogr       Date:  2012-03-15       Impact factor: 3.304

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  Collagen VI Muscle Disorders: Mutation Types, Pathogenic Mechanisms and Approaches to Therapy.

Authors:  Shireen R Lamandé
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

  1 in total

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