Literature DB >> 25723929

Limiting radiation damage for high-brilliance biological solution scattering: practical experience at the EMBL P12 beamline PETRAIII.

Cy M Jeffries1, Melissa A Graewert1, Dmitri I Svergun1, Clément E Blanchet1.   

Abstract

Radiation damage is the general curse of structural biologists who use synchrotron small-angle X-ray scattering (SAXS) to investigate biological macromolecules in solution. The EMBL-P12 biological SAXS beamline located at the PETRAIII storage ring (DESY, Hamburg, Germany) caters to an extensive user community who integrate SAXS into their diverse structural biology programs. The high brilliance of the beamline [5.1 × 10(12) photons s(-1), 10 keV, 500 (H) µm × 250 (V) µm beam size at the sample position], combined with automated sample handling and data acquisition protocols, enable the high-throughput structural characterization of macromolecules in solution. However, considering the often-significant resources users invest to prepare samples, it is crucial that simple and effective protocols are in place to limit the effects of radiation damage once it has been detected. Here various practical approaches are evaluated that users can implement to limit radiation damage at the P12 beamline to maximize the chances of collecting quality data from radiation sensitive samples.

Entities:  

Keywords:  SAXS; protein; radiation damage; synchrotron small-angle scattering

Mesh:

Substances:

Year:  2015        PMID: 25723929     DOI: 10.1107/S1600577515000375

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  36 in total

1.  Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations.

Authors:  Herimela Solomon-Degefa; Jan M Gebauer; Cy M Jeffries; Carolin D Freiburg; Patrick Meckelburg; Louise E Bird; Ulrich Baumann; Dmitri I Svergun; Raymond J Owens; Jörn M Werner; Elmar Behrmann; Mats Paulsson; Raimund Wagener
Journal:  J Biol Chem       Date:  2020-07-21       Impact factor: 5.157

2.  The dimeric ectodomain of the alkali-sensing insulin receptor-related receptor (ectoIRR) has a droplike shape.

Authors:  Eleonora V Shtykova; Maxim V Petoukhov; Andrey A Mozhaev; Igor E Deyev; Liubov A Dadinova; Nikita A Loshkarev; Alexander S Goryashchenko; Eduard V Bocharov; Cy M Jeffries; Dmitri I Svergun; Oleg V Batishchev; Alexander G Petrenko
Journal:  J Biol Chem       Date:  2019-10-15       Impact factor: 5.157

3.  Solution Structure, Self-Assembly, and Membrane Interactions of the Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH.

Authors:  E V Shtykova; M V Petoukhov; L A Dadinova; N V Fedorova; V Yu Tashkin; T A Timofeeva; A L Ksenofontov; N A Loshkarev; L A Baratova; C M Jeffries; D I Svergun; O V Batishchev
Journal:  J Virol       Date:  2019-03-05       Impact factor: 5.103

4.  Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra.

Authors:  Daniel Franke; Cy M Jeffries; Dmitri I Svergun
Journal:  Nat Methods       Date:  2015-04-06       Impact factor: 28.547

Review 5.  Predicting data quality in biological X-ray solution scattering.

Authors:  Chenzheng Wang; Yuexia Lin; Devin Bougie; Richard E Gillilan
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-07-24       Impact factor: 7.652

6.  Characterization of mAb dimers reveals predominant dimer forms common in therapeutic mAbs.

Authors:  Friederike Plath; Philippe Ringler; Alexandra Graff-Meyer; Henning Stahlberg; Matthias E Lauer; Arne C Rufer; Melissa A Graewert; Dmitri Svergun; Gerald Gellermann; Christof Finkler; Jan O Stracke; Atanas Koulov; Volker Schnaible
Journal:  MAbs       Date:  2016-03-31       Impact factor: 5.857

7.  Interfibrillar stiffening of echinoderm mutable collagenous tissue demonstrated at the nanoscale.

Authors:  Jingyi Mo; Sylvain F Prévost; Liisa M Blowes; Michaela Egertová; Nicholas J Terrill; Wen Wang; Maurice R Elphick; Himadri S Gupta
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-05       Impact factor: 11.205

8.  Structural consequences of transforming growth factor beta-1 activation from near-therapeutic X-ray doses.

Authors:  Timothy Stachowski; Thomas D Grant; Edward H Snell
Journal:  J Synchrotron Radiat       Date:  2019-06-13       Impact factor: 2.616

9.  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Authors:  Cy M Jeffries; Melissa A Graewert; Clément E Blanchet; David B Langley; Andrew E Whitten; Dmitri I Svergun
Journal:  Nat Protoc       Date:  2016-10-06       Impact factor: 13.491

10.  Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity.

Authors:  Dan Ye; Thinh P Le; Brooke Kuei; Chenhui Zhu; Peter H Zwart; Cheng Wang; Enrique D Gomez; Esther W Gomez
Journal:  Structure       Date:  2018-09-13       Impact factor: 5.006

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