Literature DB >> 25843629

The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo.

Florian A Karreth1, Markus Reschke1, Anna Ruocco1, Christopher Ng1, Bjoern Chapuy2, Valentine Léopold1, Marcela Sjoberg3, Thomas M Keane3, Akanksha Verma4, Ugo Ala1, Yvonne Tay1, David Wu5, Nina Seitzer1, Martin Del Castillo Velasco-Herrera3, Anne Bothmer1, Jacqueline Fung1, Fernanda Langellotto6, Scott J Rodig7, Olivier Elemento4, Margaret A Shipp2, David J Adams3, Roberto Chiarle8, Pier Paolo Pandolfi9.   

Abstract

Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is lacking. Here, we report that mice engineered to overexpress either the full-length murine B-Raf pseudogene Braf-rs1 or its pseudo "CDS" or "3' UTR" develop an aggressive malignancy resembling human diffuse large B cell lymphoma. We show that Braf-rs1 and its human ortholog, BRAFP1, elicit their oncogenic activity, at least in part, as competitive endogenous RNAs (ceRNAs) that elevate BRAF expression and MAPK activation in vitro and in vivo. Notably, we find that transcriptional or genomic aberrations of BRAFP1 occur frequently in multiple human cancers, including B cell lymphomas. Our engineered mouse models demonstrate the oncogenic potential of pseudogenes and indicate that ceRNA-mediated microRNA sequestration may contribute to the development of cancer.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25843629      PMCID: PMC6922011          DOI: 10.1016/j.cell.2015.02.043

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  46 in total

1.  Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs.

Authors:  Yvonne Tay; Lev Kats; Leonardo Salmena; Dror Weiss; Shen Mynn Tan; Ugo Ala; Florian Karreth; Laura Poliseno; Paolo Provero; Ferdinando Di Cunto; Judy Lieberman; Isidore Rigoutsos; Pier Paolo Pandolfi
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

2.  In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma.

Authors:  Florian A Karreth; Yvonne Tay; Daniele Perna; Ugo Ala; Shen Mynn Tan; Alistair G Rust; Gina DeNicola; Kaitlyn A Webster; Dror Weiss; Pedro A Perez-Mancera; Michael Krauthammer; Ruth Halaban; Paolo Provero; David J Adams; David A Tuveson; Pier Paolo Pandolfi
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

3.  Diffuse large B-cell lymphoma subgroups have distinct genetic profiles that influence tumor biology and improve gene-expression-based survival prediction.

Authors:  Silvia Bea; Andreas Zettl; George Wright; Itziar Salaverria; Philipp Jehn; Victor Moreno; Christof Burek; German Ott; Xavier Puig; Liming Yang; Armando Lopez-Guillermo; Wing C Chan; Timothy C Greiner; Dennis D Weisenburger; James O Armitage; Randy D Gascoyne; Joseph M Connors; Thomas M Grogan; Rita Braziel; Richard I Fisher; Erlend B Smeland; Stein Kvaloy; Harald Holte; Jan Delabie; Richard Simon; John Powell; Wyndham H Wilson; Elaine S Jaffe; Emili Montserrat; Hans-Konrad Muller-Hermelink; Louis M Staudt; Elias Campo; Andreas Rosenwald
Journal:  Blood       Date:  2005-07-26       Impact factor: 22.113

4.  Absence of the XIST gene from late-replicating isodicentric X chromosomes in leukaemia.

Authors:  K A Rack; J Chelly; R J Gibbons; S Rider; D Benjamin; R G Lafreniére; D Oscier; R W Hendriks; I W Craig; H F Willard
Journal:  Hum Mol Genet       Date:  1994-07       Impact factor: 6.150

5.  Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance.

Authors:  Rémy Denzler; Vikram Agarwal; Joanna Stefano; David P Bartel; Markus Stoffel
Journal:  Mol Cell       Date:  2014-05-01       Impact factor: 17.970

6.  Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells.

Authors:  Caroline Beard; Konrad Hochedlinger; Kathrin Plath; Anton Wutz; Rudolf Jaenisch
Journal:  Genesis       Date:  2006-01       Impact factor: 2.487

7.  C-Raf inhibits MAPK activation and transformation by B-Raf(V600E).

Authors:  Florian A Karreth; Gina M DeNicola; Stephen P Winter; David A Tuveson
Journal:  Mol Cell       Date:  2009-11-13       Impact factor: 17.970

8.  Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA.

Authors:  Demián Cazalla; Therese Yario; Joan A Steitz; Joan Steitz
Journal:  Science       Date:  2010-06-18       Impact factor: 47.728

9.  A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells.

Authors:  Per Johnsson; Amanda Ackley; Linda Vidarsdottir; Weng-Onn Lui; Martin Corcoran; Dan Grandér; Kevin V Morris
Journal:  Nat Struct Mol Biol       Date:  2013-02-24       Impact factor: 15.369

10.  A coding-independent function of gene and pseudogene mRNAs regulates tumour biology.

Authors:  Laura Poliseno; Leonardo Salmena; Jiangwen Zhang; Brett Carver; William J Haveman; Pier Paolo Pandolfi
Journal:  Nature       Date:  2010-06-24       Impact factor: 49.962

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  140 in total

1.  Lysyl Oxidase Is a Key Player in BRAF/MAPK Pathway-Driven Thyroid Cancer Aggressiveness.

Authors:  Myriem Boufraqech; Dhaval Patel; Naris Nilubol; Astin Powers; Timothy King; Jasmine Shell; Justin Lack; Lisa Zhang; Sudheer Kumar Gara; Viswanath Gunda; Joanna Klubo-Gwiezdzinska; Suresh Kumar; James Fagin; Jeffrey Knauf; Sareh Parangi; David Venzon; Martha Quezado; Electron Kebebew
Journal:  Thyroid       Date:  2018-12-28       Impact factor: 6.568

2.  Long non-coding RNA transcribed from pseudogene PPIAP43 is associated with radiation sensitivity of small cell lung cancer cells.

Authors:  Shilong Wang; Jinming Yu
Journal:  Oncol Lett       Date:  2019-09-04       Impact factor: 2.967

Review 3.  The short and long of noncoding sequences in the control of vascular cell phenotypes.

Authors:  Joseph M Miano; Xiaochun Long
Journal:  Cell Mol Life Sci       Date:  2015-05-29       Impact factor: 9.261

4.  Origination and Function of Plant Pseudogenes.

Authors:  Jianbo Xie; Sisi Chen; Weijie Xu; Yiyang Zhao; Deqiang Zhang
Journal:  Plant Signal Behav       Date:  2019-06-04

Review 5.  The Emerging Function and Mechanism of ceRNAs in Cancer.

Authors:  Yunfei Wang; Jiakai Hou; Dandan He; Ming Sun; Peng Zhang; Yonghao Yu; Yiwen Chen
Journal:  Trends Genet       Date:  2016-02-24       Impact factor: 11.639

Review 6.  Endogenous microRNA sponges: evidence and controversy.

Authors:  Daniel W Thomson; Marcel E Dinger
Journal:  Nat Rev Genet       Date:  2016-04-04       Impact factor: 53.242

Review 7.  Roles for long non-coding RNAs in physiology and disease.

Authors:  Maria-Theodora Melissari; Phillip Grote
Journal:  Pflugers Arch       Date:  2016-03-05       Impact factor: 3.657

Review 8.  The development and controversy of competitive endogenous RNA hypothesis in non-coding genes.

Authors:  Weimin Lin; Hongcheng Liu; Yonghang Tang; Yuchen Wei; Wei Wei; Lifan Zhang; Jie Chen
Journal:  Mol Cell Biochem       Date:  2020-09-25       Impact factor: 3.396

Review 9.  Non-coding RNA networks in cancer.

Authors:  Eleni Anastasiadou; Leni S Jacob; Frank J Slack
Journal:  Nat Rev Cancer       Date:  2017-11-24       Impact factor: 60.716

Review 10.  Encoding activities of non-coding RNAs.

Authors:  Yanan Pang; Chuanbin Mao; Shanrong Liu
Journal:  Theranostics       Date:  2018-03-28       Impact factor: 11.556

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