Literature DB >> 32975695

The development and controversy of competitive endogenous RNA hypothesis in non-coding genes.

Weimin Lin1, Hongcheng Liu1, Yonghang Tang1, Yuchen Wei1, Wei Wei1, Lifan Zhang1, Jie Chen2.   

Abstract

As a momentous post-transcriptional regulator, microRNAs (miRNAs) are attracting more and more attention. The classical miRNAs regulated mechanism shows it binds to the targets' 3'UTR thus play the role in post-transcription. Meanwhile, single miRNA can target multiple genes, so those should compete to bind that miRNA. Vice versa, single gene can sponge mass of miRNAs as well. Thus the competitive endogenous RNAs (ceRNAs) hypothesis was put forward in 2011. The ceRNA hypothesis has made huge achievements, in particular in non-coding genes, which including long non-coding RNAs (lncRNAs), circle RNAs (circRNAs) and pseudogenes, even viral transcripts. It also contributed greatly to epigenetics development. However, an increasing number of controversies have occurred with applause. Based on this situation, this review introduces something in detail about the ceRNAs hypothesis achieved in lncRNAs, circRNAs, pseudogenes and viral transcripts, respectively. Meanwhile, it also covers controversy of the ceRNAs hypothesis.

Keywords:  Controversy; Pseudogene; ceRNA; circRNA; lncRNA; miRNA

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Substances:

Year:  2020        PMID: 32975695     DOI: 10.1007/s11010-020-03889-2

Source DB:  PubMed          Journal:  Mol Cell Biochem        ISSN: 0300-8177            Impact factor:   3.396


  122 in total

1.  Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.

Authors:  Rui Yi; Yi Qin; Ian G Macara; Bryan R Cullen
Journal:  Genes Dev       Date:  2003-12-17       Impact factor: 11.361

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

3.  Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans.

Authors:  H R Horvitz; J E Sulston
Journal:  Genetics       Date:  1980-10       Impact factor: 4.562

4.  Processing of primary microRNAs by the Microprocessor complex.

Authors:  Ahmet M Denli; Bastiaan B J Tops; Ronald H A Plasterk; René F Ketting; Gregory J Hannon
Journal:  Nature       Date:  2004-11-07       Impact factor: 49.962

5.  RNA polymerase III transcribes human microRNAs.

Authors:  Glen M Borchert; William Lanier; Beverly L Davidson
Journal:  Nat Struct Mol Biol       Date:  2006-11-12       Impact factor: 15.369

6.  The Drosha-DGCR8 complex in primary microRNA processing.

Authors:  Jinju Han; Yoontae Lee; Kyu-Hyun Yeom; Young-Kook Kim; Hua Jin; V Narry Kim
Journal:  Genes Dev       Date:  2004-12-01       Impact factor: 11.361

7.  Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs.

Authors:  Markus T Bohnsack; Kevin Czaplinski; Dirk Gorlich
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

8.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

9.  Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.

Authors:  B Wightman; I Ha; G Ruvkun
Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

10.  Primary microRNA transcripts are processed co-transcriptionally.

Authors:  Mariangela Morlando; Monica Ballarino; Natalia Gromak; Francesca Pagano; Irene Bozzoni; Nick J Proudfoot
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

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  11 in total

1.  Long Noncoding RNA MEG3-205/Let-7a/MyD88 Axis Promotes Renal Inflammation and Fibrosis in Diabetic Nephropathy.

Authors:  Qimei Luo; Xi Xia; Qingqing Luo; Yue Qiu; Lan Dong; Chen Zhao; Fenfen Peng; Jing Yu; Fengxian Huang; Feng He
Journal:  Kidney Dis (Basel)       Date:  2022-03-17

2.  Long Noncoding RNA LINC01703 Exacerbates the Malignant Properties of Non-Small Cell Lung Cancer by Upregulating MACC1 in a MicroRNA-605-3p-Mediated Manner.

Authors:  Ziyi Wang; Xinyu Zhang; Xuedong Zhang; Xuedong Jiang; Wenya Li
Journal:  Oncol Res       Date:  2021-09-07       Impact factor: 5.574

Review 3.  Metastatic EMT Phenotype Is Governed by MicroRNA-200-Mediated Competing Endogenous RNA Networks.

Authors:  Sara Uhan; Nina Hauptman
Journal:  Cells       Date:  2021-12-28       Impact factor: 6.600

4.  Knockdown of ADORA2A antisense RNA 1 inhibits cell proliferation and enhances imatinib sensitivity in chronic myeloid leukemia.

Authors:  Yabo Liu; Huibo Li; Yanqiu Zhao; Dandan Li; Qian Zhang; Jinyue Fu; Shengjin Fan
Journal:  Bioengineered       Date:  2022-02       Impact factor: 3.269

5.  Long noncoding RNASEH1-AS1 exacerbates the progression of non-small cell lung cancer by acting as a ceRNA to regulate microRNA-516a-5p/FOXK1 and thereby activating the Wnt/β-catenin signaling pathway.

Authors:  Chan Zhang; Jian Huang; Ke Lou; Hui Ouyang
Journal:  Cancer Med       Date:  2022-02-15       Impact factor: 4.452

6.  Bioinformatics Analysis of mRNAs and miRNAs for Identifying Potential Biomarkers in Lung Adenosquamous Carcinoma.

Authors:  Jin Nie; Ling Gong; Zhu Li; Dong Ou; Ling Zhang; Yi Liu; Jianyong Zhang; Daishun Liu
Journal:  Comput Math Methods Med       Date:  2022-03-02       Impact factor: 2.238

7.  Pseudogene AK4P1 promotes pancreatic ductal adenocarcinoma progression through relieving miR-375-mediated YAP1 degradation.

Authors:  Lang Jia; Yun Zhang; Feng Pu; Chong Yang; Shula Yang; Jinze Yu; Zihan Xu; Hongji Yang; Yu Zhou; Shikai Zhu
Journal:  Aging (Albany NY)       Date:  2022-02-27       Impact factor: 5.682

8.  Circular RNA expression profile in transgenic diabetic mouse kidneys.

Authors:  Xuan Xiong; Changchun Liu; Meiren Shen; Qian Yang; Qiang Zhao; Xiaoyan Li; Xiaoshi Zhong; Zhiwei Wang
Journal:  Cell Mol Biol Lett       Date:  2021-06-07       Impact factor: 5.787

9.  hsa_circWDR37_016 Regulates Hypoxia-Induced Proliferation of Pulmonary Arterial Smooth Muscle Cells.

Authors:  Shan-Shan Li; Shuang Liang; Yao Long; Xu Chen; Xin Jin
Journal:  Cardiovasc Ther       Date:  2022-01-17       Impact factor: 3.023

10.  Long Non-Coding RNAs Might Regulate Phenotypic Switch of Vascular Smooth Muscle Cells Acting as ceRNA: Implications for In-Stent Restenosis.

Authors:  Alberto Arencibia; Fernando Lanas; Luis A Salazar
Journal:  Int J Mol Sci       Date:  2022-03-12       Impact factor: 5.923

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