Literature DB >> 26944276

Roles for long non-coding RNAs in physiology and disease.

Maria-Theodora Melissari1, Phillip Grote2.   

Abstract

While the vast majority of the genome is transcribed into RNA, only a small fraction of these transcripts have protein-coding potential. A large fraction of the transcribed RNA belongs to the class known as long non-coding RNAs (lncRNAs). Several recent studies have shown that at least some of these lncRNA transcripts represent functional RNA molecules. LncRNAs can utilize a wide range of mechanisms to regulate the RNA and/or the protein content of a cell on the transcriptional and the post-transcriptional levels. So far, many studies have identified differentially expressed lncRNAs in various physiological contexts, genetic disorders and human diseases. A steadily increasing number of studies could establish functional roles for some of these lncRNAs in developmental processes, cancer and tissue homeostasis. Taken together, these functions provide an additional layer of gene regulation and contribute to the high complexity of physiological and disease-related phenotypes.

Entities:  

Keywords:  Cancer; Chromatin; Disease; Enhancers; Gene regulation; Transcriptomics; lncRNAs

Mesh:

Substances:

Year:  2016        PMID: 26944276     DOI: 10.1007/s00424-016-1804-y

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  92 in total

1.  Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction.

Authors:  Nobuaki Ishii; Kouichi Ozaki; Hiroshi Sato; Hiroya Mizuno; Atsushi Takahashi; Yoshinari Miyamoto; Shiro Ikegawa; Naoyuki Kamatani; Masatsugu Hori; Yusuke Nakamura; Toshihiro Tanaka
Journal:  J Hum Genet       Date:  2006-10-26       Impact factor: 3.172

2.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

3.  HELLP babies link a novel lincRNA to the trophoblast cell cycle.

Authors:  Marie van Dijk; Hari K Thulluru; Joyce Mulders; Omar J Michel; Ankie Poutsma; Sandra Windhorst; Gunilla Kleiverda; Daoud Sie; Augusta M A Lachmeijer; Cees B M Oudejans
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

4.  Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA.

Authors:  Katrin Panzitt; Marisa M O Tschernatsch; Christian Guelly; Tarek Moustafa; Martin Stradner; Heimo M Strohmaier; Charles R Buck; Helmut Denk; Renée Schroeder; Michael Trauner; Kurt Zatloukal
Journal:  Gastroenterology       Date:  2006-08-14       Impact factor: 22.682

5.  Parental imprinting of the mouse H19 gene.

Authors:  M S Bartolomei; S Zemel; S M Tilghman
Journal:  Nature       Date:  1991-05-09       Impact factor: 49.962

6.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

7.  The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Authors:  Phillip Grote; Lars Wittler; David Hendrix; Frederic Koch; Sandra Währisch; Arica Beisaw; Karol Macura; Gaby Bläss; Manolis Kellis; Martin Werber; Bernhard G Herrmann
Journal:  Dev Cell       Date:  2013-01-28       Impact factor: 12.270

8.  Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs.

Authors:  Samir Ounzain; Rudi Micheletti; Tal Beckmann; Blanche Schroen; Michael Alexanian; Iole Pezzuto; Stefania Crippa; Mohamed Nemir; Alexandre Sarre; Rory Johnson; Jérôme Dauvillier; Frédéric Burdet; Mark Ibberson; Roderic Guigó; Ioannis Xenarios; Stephane Heymans; Thierry Pedrazzini
Journal:  Eur Heart J       Date:  2014-04-30       Impact factor: 29.983

9.  RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).

Authors:  Nathan A Siegfried; Steven Busan; Greggory M Rice; Julie A E Nelson; Kevin M Weeks
Journal:  Nat Methods       Date:  2014-07-13       Impact factor: 28.547

10.  Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs.

Authors:  Ana C Marques; Jim Hughes; Bryony Graham; Monika S Kowalczyk; Doug R Higgs; Chris P Ponting
Journal:  Genome Biol       Date:  2013-11-29       Impact factor: 13.583

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  39 in total

Review 1.  LncRNA: A Potential Research Direction in Intestinal Barrier Function.

Authors:  Zhi-Feng Jiang; Lin Zhang
Journal:  Dig Dis Sci       Date:  2020-06-26       Impact factor: 3.199

2.  Long non-coding RNA NNT-AS1 contributes to cell proliferation, metastasis and apoptosis in human ovarian cancer.

Authors:  Yaqing Huang; Junyu Shi; Yun Xu
Journal:  Oncol Lett       Date:  2018-04-13       Impact factor: 2.967

3.  LncRNA-UC.25 + shRNA Alleviates P2Y14 Receptor-Mediated Diabetic Neuropathic Pain via STAT1.

Authors:  Baoguo Wu; Congfa Zhou; Zehao Xiao; Gan Tang; Hongmin Guo; Zihui Hu; Qixing Hu; Hao Peng; Lingzhi Pi; Zhihua Zhang; Miaomiao Wang; Taotao Peng; Jiaqi Huang; Shangdong Liang; Guilin Li
Journal:  Mol Neurobiol       Date:  2022-06-22       Impact factor: 5.682

4.  Suppression of Long Noncoding RNA SNHG1 Inhibits the Development of Hypopharyngeal Squamous Cell Carcinoma via Increasing PARP6 Expression.

Authors:  Qian Chen; Xiao He; Bin Li; Jingjing Chen; Xuxia Tang
Journal:  Evid Based Complement Alternat Med       Date:  2022-07-05       Impact factor: 2.650

Review 5.  Prognostic values of long noncoding RNA PVT1 in various carcinomas: An updated systematic review and meta-analysis.

Authors:  Meizhu Xiao; Ying Feng; Chongdong Liu; Zhenyu Zhang
Journal:  Cell Prolif       Date:  2018-09-05       Impact factor: 6.831

Review 6.  Epigenetics and bone diseases.

Authors:  Tu Huang; Xiu Peng; Zhenxia Li; Quan Zhou; Shishu Huang; Yuting Wang; Juan Li; Youqiang Song
Journal:  Genet Res (Camb)       Date:  2018-07-26       Impact factor: 1.588

7.  Systematic analysis of long intergenic non-coding RNAs in C. elegans germline uncovers roles in somatic growth.

Authors:  Hasan Ishtayeh; Hanna Achache; Eitan Kroizer; Yisrael Rappaport; Eyal Itskovits; Hila Gingold; Corinne Best; Oded Rechavi; Yonatan B Tzur
Journal:  RNA Biol       Date:  2020-09-05       Impact factor: 4.652

8.  The effects of LncRNA PVT1 on clinical characteristics and survival in breast cancer patients: A protocol for systematic review and meta analysis.

Authors:  Li Xie; Gang Feng; Ping Zhu; Jiang Xie
Journal:  Medicine (Baltimore)       Date:  2021-02-26       Impact factor: 1.817

Review 9.  Long noncoding RNAs and Alzheimer's disease.

Authors:  Qiong Luo; Yinghui Chen
Journal:  Clin Interv Aging       Date:  2016-06-29       Impact factor: 4.458

Review 10.  Methylation and Noncoding RNAs in Gastric Cancer: Everything Is Connected.

Authors:  Irina V Bure; Marina V Nemtsova
Journal:  Int J Mol Sci       Date:  2021-05-26       Impact factor: 5.923

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