Literature DB >> 25784758

Nuclear lamins are not required for lamina-associated domain organization in mouse embryonic stem cells.

Mario Amendola1, Bas van Steensel2.   

Abstract

In mammals, the nuclear lamina interacts with hundreds of large genomic regions, termed lamina-associated domains (LADs) that are generally in a transcriptionally repressed state. Lamins form the major structural component of the lamina and have been reported to bind DNA and chromatin. Here, we systematically evaluate whether lamins are necessary for the LAD organization in murine embryonic stem cells. Surprisingly, removal of essentially all lamins does not have any detectable effect on the genome-wide interaction pattern of chromatin with emerin, a marker of the inner nuclear membrane. This suggests that other components of the lamina mediate these interactions.
© 2015 The Authors.

Entities:  

Keywords:  genome‐wide mapping; nuclear architecture; interphase chromosome organization; nuclear lamina

Mesh:

Substances:

Year:  2015        PMID: 25784758      PMCID: PMC4428043          DOI: 10.15252/embr.201439789

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  37 in total

1.  Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells.

Authors:  Eran Meshorer; Dhananjay Yellajoshula; Eric George; Peter J Scambler; David T Brown; Tom Misteli
Journal:  Dev Cell       Date:  2006-01       Impact factor: 12.270

2.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

3.  Loss of lamin B1 results in prolongation of S phase and decondensation of chromosome territories.

Authors:  Jordi Camps; Darawalee Wangsa; Martin Falke; Markus Brown; Chanelle M Case; Michael R Erdos; Thomas Ried
Journal:  FASEB J       Date:  2014-04-14       Impact factor: 5.191

4.  Lamin A/C expression is a marker of mouse and human embryonic stem cell differentiation.

Authors:  Dan Constantinescu; Heather L Gray; Paul J Sammak; Gerald P Schatten; Antonei B Csoka
Journal:  Stem Cells       Date:  2005-09-22       Impact factor: 6.277

Review 5.  Cell cycle control of embryonic stem cells.

Authors:  Josephine White; Stephen Dalton
Journal:  Stem Cell Rev       Date:  2005       Impact factor: 5.739

6.  Domain-specific interactions of human HP1-type chromodomain proteins and inner nuclear membrane protein LBR.

Authors:  Q Ye; I Callebaut; A Pezhman; J C Courvalin; H J Worman
Journal:  J Biol Chem       Date:  1997-06-06       Impact factor: 5.157

7.  Defects in lamin B1 expression or processing affect interphase chromosome position and gene expression.

Authors:  Ashraf Malhas; Chiu Fan Lee; Rebecca Sanders; Nigel J Saunders; David J Vaux
Journal:  J Cell Biol       Date:  2007-02-20       Impact factor: 10.539

8.  The inner nuclear membrane protein lamin B receptor forms distinct microdomains and links epigenetically marked chromatin to the nuclear envelope.

Authors:  Dimitra Makatsori; Niki Kourmouli; Hara Polioudaki; Leonard D Shultz; Kelvin McLean; Panayiotis A Theodoropoulos; Prim B Singh; Spyros D Georgatos
Journal:  J Biol Chem       Date:  2004-03-31       Impact factor: 5.157

9.  The integrity of a lamin-B1-dependent nucleoskeleton is a fundamental determinant of RNA synthesis in human cells.

Authors:  Chi W Tang; Apolinar Maya-Mendoza; Catherine Martin; Kang Zeng; Songbi Chen; Dorota Feret; Stuart A Wilson; Dean A Jackson
Journal:  J Cell Sci       Date:  2008-03-11       Impact factor: 5.285

10.  Specific nuclear envelope transmembrane proteins can promote the location of chromosomes to and from the nuclear periphery.

Authors:  Nikolaj Zuleger; Shelagh Boyle; David A Kelly; Jose I de las Heras; Vassiliki Lazou; Nadia Korfali; Dzmitry G Batrakou; K Natalie Randles; Glenn E Morris; David J Harrison; Wendy A Bickmore; Eric C Schirmer
Journal:  Genome Biol       Date:  2013-02-15       Impact factor: 13.583

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  48 in total

Review 1.  Blank spots on the map: some current questions on nuclear organization and genome architecture.

Authors:  Carmen Adriaens; Leonid A Serebryannyy; Marina Feric; Andria Schibler; Karen J Meaburn; Nard Kubben; Pawel Trzaskoma; Sigal Shachar; Sandra Vidak; Elizabeth H Finn; Varun Sood; Gianluca Pegoraro; Tom Misteli
Journal:  Histochem Cell Biol       Date:  2018-09-20       Impact factor: 4.304

2.  ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.

Authors:  Xingqi Chen; Ying Shen; Will Draper; Jason D Buenrostro; Ulrike Litzenburger; Seung Woo Cho; Ansuman T Satpathy; Ava C Carter; Rajarshi P Ghosh; Alexandra East-Seletsky; Jennifer A Doudna; William J Greenleaf; Jan T Liphardt; Howard Y Chang
Journal:  Nat Methods       Date:  2016-10-17       Impact factor: 28.547

Review 3.  Recent advances in the spatial organization of the mammalian genome.

Authors:  Yatendra Kumar; Dipta Sengupta; Wendya Bickmore
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 4.  Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.

Authors:  Bas van Steensel; Andrew S Belmont
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

Review 5.  Many paths lead chromatin to the nuclear periphery.

Authors:  Molly R Gordon; Benjamin D Pope; Jiao Sima; David M Gilbert
Journal:  Bioessays       Date:  2015-06-08       Impact factor: 4.345

6.  Nuclear lamins in cancer.

Authors:  Jerome Irianto; Charlotte R Pfeifer; Irena L Ivanovska; Joe Swift; Dennis E Discher
Journal:  Cell Mol Bioeng       Date:  2016-04-18       Impact factor: 2.321

Review 7.  The redundancy of the mammalian heterochromatic compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Curr Opin Genet Dev       Date:  2015-12-17       Impact factor: 5.578

8.  Phosphorylated Lamin A/C in the Nuclear Interior Binds Active Enhancers Associated with Abnormal Transcription in Progeria.

Authors:  Kohta Ikegami; Stefano Secchia; Omar Almakki; Jason D Lieb; Ivan P Moskowitz
Journal:  Dev Cell       Date:  2020-03-23       Impact factor: 12.270

Review 9.  Replication timing and transcriptional control: beyond cause and effect-part III.

Authors:  Juan Carlos Rivera-Mulia; David M Gilbert
Journal:  Curr Opin Cell Biol       Date:  2016-04-23       Impact factor: 8.382

10.  Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery.

Authors:  Xiaobin Zheng; Jiabiao Hu; Sibiao Yue; Lidya Kristiani; Miri Kim; Michael Sauria; James Taylor; Youngjo Kim; Yixian Zheng
Journal:  Mol Cell       Date:  2018-06-28       Impact factor: 17.970

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