Literature DB >> 26060083

Many paths lead chromatin to the nuclear periphery.

Molly R Gordon1, Benjamin D Pope1, Jiao Sima1, David M Gilbert1,2.   

Abstract

It is now well accepted that defined architectural compartments within the cell nucleus can regulate the transcriptional activity of chromosomal domains within their vicinity. However, it is generally unclear how these compartments are formed. The nuclear periphery has received a great deal of attention as a repressive compartment that is implicated in many cellular functions during development and disease. The inner nuclear membrane, the nuclear lamina, and associated proteins compose the nuclear periphery and together they interact with proximal chromatin creating a repressive environment. A new study by Harr et al. identifies specific protein-DNA interactions and epigenetic states necessary to re-position chromatin to the nuclear periphery in a cell-type specific manner. Here, we review concepts in gene positioning within the nucleus and current accepted models of dynamic gene repositioning within the nucleus during differentiation. This study highlights that myriad pathways lead to nuclear organization.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  histone modifications; lamina-associated domains; nuclear lamina; nuclear organization

Mesh:

Substances:

Year:  2015        PMID: 26060083      PMCID: PMC4511709          DOI: 10.1002/bies.201500034

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  35 in total

1.  DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Authors:  Joseph M Zullo; Ignacio A Demarco; Roger Piqué-Regi; Daniel J Gaffney; Charles B Epstein; Chauncey J Spooner; Teresa R Luperchio; Bradley E Bernstein; Jonathan K Pritchard; Karen L Reddy; Harinder Singh
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

2.  Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

Authors:  Irina Solovei; Moritz Kreysing; Christian Lanctôt; Süleyman Kösem; Leo Peichl; Thomas Cremer; Jochen Guck; Boris Joffe
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

3.  Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.

Authors:  Benjamin D Towbin; Cristina González-Aguilera; Ragna Sack; Dimos Gaidatzis; Véronique Kalck; Peter Meister; Peter Askjaer; Susan M Gasser
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

4.  Reactivation of developmentally silenced globin genes by forced chromatin looping.

Authors:  Wulan Deng; Jeremy W Rupon; Ivan Krivega; Laura Breda; Irene Motta; Kristen S Jahn; Andreas Reik; Philip D Gregory; Stefano Rivella; Ann Dean; Gerd A Blobel
Journal:  Cell       Date:  2014-08-14       Impact factor: 41.582

5.  Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor.

Authors:  Wulan Deng; Jongjoo Lee; Hongxin Wang; Jeff Miller; Andreas Reik; Philip D Gregory; Ann Dean; Gerd A Blobel
Journal:  Cell       Date:  2012-06-08       Impact factor: 41.582

6.  Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.

Authors:  Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron M Kerkhoven; Maarten van Lohuizen; Marcel Reinders; Lodewyk Wessels; Bas van Steensel
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

Review 7.  Nuclear organization and genome function.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Annu Rev Cell Dev Biol       Date:  2012-08-17       Impact factor: 13.827

8.  Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells.

Authors:  Pierre Therizols; Robert S Illingworth; Celine Courilleau; Shelagh Boyle; Andrew J Wood; Wendy A Bickmore
Journal:  Science       Date:  2014-12-05       Impact factor: 47.728

9.  Specific nuclear envelope transmembrane proteins can promote the location of chromosomes to and from the nuclear periphery.

Authors:  Nikolaj Zuleger; Shelagh Boyle; David A Kelly; Jose I de las Heras; Vassiliki Lazou; Nadia Korfali; Dzmitry G Batrakou; K Natalie Randles; Glenn E Morris; David J Harrison; Wendy A Bickmore; Eric C Schirmer
Journal:  Genome Biol       Date:  2013-02-15       Impact factor: 13.583

10.  β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications.

Authors:  Qian Bian; Nimish Khanna; Jurgis Alvikas; Andrew S Belmont
Journal:  J Cell Biol       Date:  2013-12-02       Impact factor: 10.539

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  6 in total

1.  The Chromatin-Associated Protein PWO1 Interacts with Plant Nuclear Lamin-like Components to Regulate Nuclear Size.

Authors:  Pawel Mikulski; Mareike L Hohenstatt; Sara Farrona; Cezary Smaczniak; Yvonne Stahl; Kerstin Kaufmann; Gerco Angenent; Daniel Schubert
Journal:  Plant Cell       Date:  2019-03-26       Impact factor: 11.277

2.  O-fucosylated glycoproteins form assemblies in close proximity to the nuclear pore complexes of Toxoplasma gondii.

Authors:  Giulia Bandini; John R Haserick; Edwin Motari; Dinkorma T Ouologuem; Sebastian Lourido; David S Roos; Catherine E Costello; Phillips W Robbins; John Samuelson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-23       Impact factor: 11.205

Review 3.  Replication timing and transcriptional control: beyond cause and effect-part III.

Authors:  Juan Carlos Rivera-Mulia; David M Gilbert
Journal:  Curr Opin Cell Biol       Date:  2016-04-23       Impact factor: 8.382

4.  1Q12 Loci Movement in the Interphase Nucleus Under the Action of ROS Is an Important Component of the Mechanism That Determines Copy Number Variation of Satellite III (1q12) in Health and Schizophrenia.

Authors:  Marina Sergeevna Konkova; Elizaveta Sergeevna Ershova; Ekaterina Alekseevna Savinova; Elena Mikhailovna Malinovskaya; Galina Vasilievna Shmarina; Andrey Vladimirovich Martynov; Roman Vladimirovich Veiko; Nataly Vyacheslavovna Zakharova; Pavel Umriukhin; Georgy Petrovich Kostyuk; Vera Leonidovna Izhevskaya; Sergey Ivanovich Kutsev; Natalia Nikolaevna Veiko; Svetlana Victorovna Kostyuk
Journal:  Front Cell Dev Biol       Date:  2020-06-05

5.  The PRR14 heterochromatin tether encodes modular domains that mediate and regulate nuclear lamina targeting.

Authors:  Kelly L Dunlevy; Valentina Medvedeva; Jade E Wilson; Mohammed Hoque; Trinity Pellegrin; Adam Maynard; Madison M Kremp; Jason S Wasserman; Andrey Poleshko; Richard A Katz
Journal:  J Cell Sci       Date:  2020-05-27       Impact factor: 5.285

Review 6.  The Role of Human Satellite III (1q12) Copy Number Variation in the Adaptive Response during Aging, Stress, and Pathology: A Pendulum Model.

Authors:  Lev N Porokhovnik; Natalia N Veiko; Elizaveta S Ershova; Svetlana V Kostyuk
Journal:  Genes (Basel)       Date:  2021-09-28       Impact factor: 4.096

  6 in total

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