Literature DB >> 25784145

Protein design: Past, present, and future.

Lynne Regan1,2,3, Diego Caballero3,4, Michael R Hinrichsen1, Alejandro Virrueta3,5, Danielle M Williams1, Corey S O'Hern3,4,5,6.   

Abstract

Building on the pioneering work of Ho and DeGrado (J Am Chem Soc 1987, 109, 6751-6758) in the late 1980s, protein design approaches have revealed many fundamental features of protein structure and stability. We are now in the era that the early work presaged - the design of new proteins with practical applications and uses. Here we briefly survey some past milestones in protein design, in addition to highlighting recent progress and future aspirations.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  computation; nanotechnology; protein design; review

Mesh:

Year:  2015        PMID: 25784145      PMCID: PMC4856012          DOI: 10.1002/bip.22639

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  105 in total

1.  Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms.

Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

2.  On the origin of cancer cells.

Authors:  O WARBURG
Journal:  Science       Date:  1956-02-24       Impact factor: 47.728

3.  A new bright green-emitting fluorescent protein--engineered monomeric and dimeric forms.

Authors:  Robielyn P Ilagan; Elizabeth Rhoades; David F Gruber; Hung-Teh Kao; Vincent A Pieribone; Lynne Regan
Journal:  FEBS J       Date:  2010-03-18       Impact factor: 5.542

4.  Inverse protein folding problem: designing polymer sequences.

Authors:  K Yue; K A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

5.  Signal transduction and transcriptional regulation by glucocorticoid receptor-LexA fusion proteins.

Authors:  P J Godowski; D Picard; K R Yamamoto
Journal:  Science       Date:  1988-08-12       Impact factor: 47.728

6.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

7.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

8.  Synthesis of bioactive protein hydrogels by genetically encoded SpyTag-SpyCatcher chemistry.

Authors:  Fei Sun; Wen-Bin Zhang; Alborz Mahdavi; Frances H Arnold; David A Tirrell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

Review 9.  Chromophore transformations in red fluorescent proteins.

Authors:  Fedor V Subach; Vladislav V Verkhusha
Journal:  Chem Rev       Date:  2012-05-04       Impact factor: 60.622

10.  A LOV2 domain-based optogenetic tool to control protein degradation and cellular function.

Authors:  Christian Renicke; Daniel Schuster; Svetlana Usherenko; Lars-Oliver Essen; Christof Taxis
Journal:  Chem Biol       Date:  2013-04-18
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  8 in total

Review 1.  A designed repeat protein as an affinity capture reagent.

Authors:  Elizabeth B Speltz; Rebecca S H Brown; Holly S Hajare; Christian Schlieker; Lynne Regan
Journal:  Biochem Soc Trans       Date:  2015-10       Impact factor: 5.407

2.  Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations.

Authors:  Emilia P Barros; Jamie M Schiffer; Anastassia Vorobieva; Jiayi Dou; David Baker; Rommie E Amaro
Journal:  J Chem Theory Comput       Date:  2019-09-10       Impact factor: 6.006

Review 3.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

4.  A complete rule set for designing symmetry combination materials from protein molecules.

Authors:  Joshua Laniado; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-25       Impact factor: 11.205

5.  ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design.

Authors:  Christopher W Wood; Jack W Heal; Andrew R Thomson; Gail J Bartlett; Amaurys Á Ibarra; R Leo Brady; Richard B Sessions; Derek N Woolfson
Journal:  Bioinformatics       Date:  2017-10-01       Impact factor: 6.937

6.  The G protein coupled receptor CXCR4 designed by the QTY code becomes more hydrophilic and retains cell signaling activity.

Authors:  Lotta Tegler; Karolina Corin; Horst Pick; Jennifer Brookes; Michael Skuhersky; Horst Vogel; Shuguang Zhang
Journal:  Sci Rep       Date:  2020-12-07       Impact factor: 4.379

7.  Protein rethreading: A novel approach to protein design.

Authors:  Sayeh Agah; Sandra Poulos; Austin Yu; Iga Kucharska; Salem Faham
Journal:  Sci Rep       Date:  2016-05-27       Impact factor: 4.379

8.  Peptide Assembly Directed and Quantified Using Megadalton DNA Nanostructures.

Authors:  Juan Jin; Emily G Baker; Christopher W Wood; Jonathan Bath; Derek N Woolfson; Andrew J Turberfield
Journal:  ACS Nano       Date:  2019-08-08       Impact factor: 15.881

  8 in total

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