Literature DB >> 33844406

The interplay between DNA and histone methylation: molecular mechanisms and disease implications.

Yinglu Li1, Xiao Chen1, Chao Lu1.   

Abstract

Methylation of cytosine in CpG dinucleotides and histone lysine and arginine residues is a chromatin modification that critically contributes to the regulation of genome integrity, replication, and accessibility. A strong correlation exists between the genome-wide distribution of DNA and histone methylation, suggesting an intimate relationship between these epigenetic marks. Indeed, accumulating literature reveals complex mechanisms underlying the molecular crosstalk between DNA and histone methylation. These in vitro and in vivo discoveries are further supported by the finding that genes encoding DNA- and histone-modifying enzymes are often mutated in overlapping human diseases. Here, we summarize recent advances in understanding how DNA and histone methylation cooperate to maintain the cellular epigenomic landscape. We will also discuss the potential implication of these insights for understanding the etiology of, and developing biomarkers and therapies for, human congenital disorders and cancers that are driven by chromatin abnormalities.
© 2021 The Authors.

Entities:  

Keywords:  DNA methylation; cancer; chromatin; developmental disorder; histone methylation

Mesh:

Substances:

Year:  2021        PMID: 33844406      PMCID: PMC8097341          DOI: 10.15252/embr.202051803

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  262 in total

1.  Targets and genomic constraints of ectopic Dnmt3b expression.

Authors:  Yingying Zhang; Jocelyn Charlton; Rahul Karnik; Isabel Beerman; Zachary D Smith; Hongcang Gu; Patrick Boyle; Xiaoli Mi; Kendell Clement; Ramona Pop; Andreas Gnirke; Derrick J Rossi; Alexander Meissner
Journal:  Elife       Date:  2018-11-23       Impact factor: 8.140

2.  The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.

Authors:  R S Hansen; C Wijmenga; P Luo; A M Stanek; T K Canfield; C M Weemaes; S M Gartler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

3.  The defining DNA methylation signature of Kabuki syndrome enables functional assessment of genetic variants of unknown clinical significance.

Authors:  Erfan Aref-Eshghi; Laila C Schenkel; Hanxin Lin; Cindy Skinner; Peter Ainsworth; Guillaume Paré; David Rodenhiser; Charles Schwartz; Bekim Sadikovic
Journal:  Epigenetics       Date:  2017-11-07       Impact factor: 4.528

4.  Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies.

Authors:  Omar Abdel-Wahab; Ann Mullally; Cyrus Hedvat; Guillermo Garcia-Manero; Jay Patel; Martha Wadleigh; Sebastien Malinge; JinJuan Yao; Outi Kilpivaara; Rukhmi Bhat; Kety Huberman; Sabrena Thomas; Igor Dolgalev; Adriana Heguy; Elisabeth Paietta; Michelle M Le Beau; Miloslav Beran; Martin S Tallman; Benjamin L Ebert; Hagop M Kantarjian; Richard M Stone; D Gary Gilliland; John D Crispino; Ross L Levine
Journal:  Blood       Date:  2009-05-06       Impact factor: 22.113

5.  The Arginine Methyltransferase PRMT6 Regulates DNA Methylation and Contributes to Global DNA Hypomethylation in Cancer.

Authors:  Nicolas Veland; Swanand Hardikar; Yi Zhong; Sitaram Gayatri; Jiameng Dan; Brian D Strahl; Scott B Rothbart; Mark T Bedford; Taiping Chen
Journal:  Cell Rep       Date:  2017-12-19       Impact factor: 9.423

6.  LSH and G9a/GLP complex are required for developmentally programmed DNA methylation.

Authors:  Kevin Myant; Ausma Termanis; Arvind Y M Sundaram; Tristin Boe; Chao Li; Cara Merusi; Joe Burrage; Jose I de Las Heras; Irina Stancheva
Journal:  Genome Res       Date:  2010-12-13       Impact factor: 9.043

7.  Mutations in DNMT1 cause hereditary sensory neuropathy with dementia and hearing loss.

Authors:  Christopher J Klein; Maria-Victoria Botuyan; Yanhong Wu; Christopher J Ward; Garth A Nicholson; Simon Hammans; Kaori Hojo; Hiromitch Yamanishi; Adam R Karpf; Douglas C Wallace; Mariella Simon; Cecilie Lander; Lisa A Boardman; Julie M Cunningham; Glenn E Smith; William J Litchy; Benjamin Boes; Elizabeth J Atkinson; Sumit Middha; P James B Dyck; Joseph E Parisi; Georges Mer; David I Smith; Peter J Dyck
Journal:  Nat Genet       Date:  2011-05-01       Impact factor: 38.330

8.  Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3.

Authors:  Jark Böttcher; David Dilworth; Ulrich Reiser; Ralph A Neumüller; Michael Schleicher; Mark Petronczki; Markus Zeeb; Nikolai Mischerikow; Abdellah Allali-Hassani; Magdalena M Szewczyk; Fengling Li; Steven Kennedy; Masoud Vedadi; Dalia Barsyte-Lovejoy; Peter J Brown; Kilian V M Huber; Catherine M Rogers; Carrow I Wells; Oleg Fedorov; Klaus Rumpel; Andreas Zoephel; Moriz Mayer; Tobias Wunberg; Dietrich Böse; Stephan Zahn; Heribert Arnhof; Helmut Berger; Christoph Reiser; Alexandra Hörmann; Teresa Krammer; Maja Corcokovic; Bernadette Sharps; Sandra Winkler; Daniela Häring; Xiao-Ling Cockcroft; Julian E Fuchs; Barbara Müllauer; Alexander Weiss-Puxbaum; Thomas Gerstberger; Guido Boehmelt; Christopher R Vakoc; Cheryl H Arrowsmith; Mark Pearson; Darryl B McConnell
Journal:  Nat Chem Biol       Date:  2019-07-08       Impact factor: 16.174

9.  Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.

Authors:  Patricia Heyn; Clare V Logan; Adeline Fluteau; Rachel C Challis; Tatsiana Auchynnikava; Carol-Anne Martin; Joseph A Marsh; Francesca Taglini; Fiona Kilanowski; David A Parry; Valerie Cormier-Daire; Chin-To Fong; Kate Gibson; Vivian Hwa; Lourdes Ibáñez; Stephen P Robertson; Giorgia Sebastiani; Juri Rappsilber; Robin C Allshire; Martin A M Reijns; Andrew Dauber; Duncan Sproul; Andrew P Jackson
Journal:  Nat Genet       Date:  2018-11-26       Impact factor: 38.330

10.  Chromatin structure and its chemical modifications regulate the ubiquitin ligase substrate selectivity of UHRF1.

Authors:  Robert M Vaughan; Bradley M Dickson; Matthew F Whelihan; Andrea L Johnstone; Evan M Cornett; Marcus A Cheek; Christine A Ausherman; Martis W Cowles; Zu-Wen Sun; Scott B Rothbart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

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  14 in total

1.  A combination of transcriptome and methylation analyses reveals the role of lncRNA HOTAIRM1 in the proliferation and metastasis of breast cancer.

Authors:  Gui-E Lai; Jian Zhou; Cui-Liu Huang; Cun-Jun Mai; Yi-Mei Lai; Zhi-Qin Lin; Tao Peng; Yuan Luo; Feng-En Liu
Journal:  Gland Surg       Date:  2022-05

Review 2.  Structural and functional specificity of H3K36 methylation.

Authors:  Ulysses Tsz Fung Lam; Bryan Kok Yan Tan; John Jia Xin Poh; Ee Sin Chen
Journal:  Epigenetics Chromatin       Date:  2022-05-18       Impact factor: 5.465

Review 3.  Large-Scale Chromatin Rearrangements in Cancer.

Authors:  Kosuke Yamaguchi; Xiaoying Chen; Asami Oji; Ichiro Hiratani; Pierre-Antoine Defossez
Journal:  Cancers (Basel)       Date:  2022-05-12       Impact factor: 6.575

Review 4.  Epigenetics and Neuroinflammation Associated With Neurodevelopmental Disorders: A Microglial Perspective.

Authors:  Munekazu Komada; Yuhei Nishimura
Journal:  Front Cell Dev Biol       Date:  2022-05-12

Review 5.  The interplay between DNA and histone methylation: molecular mechanisms and disease implications.

Authors:  Yinglu Li; Xiao Chen; Chao Lu
Journal:  EMBO Rep       Date:  2021-04-12       Impact factor: 8.807

Review 6.  Evolution of CG Methylation Maintenance Machinery in Plants.

Authors:  Louis Tirot; Pauline E Jullien; Mathieu Ingouff
Journal:  Epigenomes       Date:  2021-09-14

7.  Epigenetic activation of the elongator complex sensitizes gallbladder cancer to gemcitabine therapy.

Authors:  Sunwang Xu; Cen Jiang; Ruirong Lin; Xiaopeng Wang; Xiaoqiang Hu; Wei Chen; Xiangjin Chen; Tao Chen
Journal:  J Exp Clin Cancer Res       Date:  2021-11-25

8.  H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells.

Authors:  Haifen Chen; Bo Hu; Cynthia Horth; Eric Bareke; Phillip Rosenbaum; Sin Young Kwon; Jacinthe Sirois; Daniel N Weinberg; Faith M Robison; Benjamin A Garcia; Chao Lu; William A Pastor; Jacek Majewski
Journal:  Genome Res       Date:  2022-04-08       Impact factor: 9.438

Review 9.  Epigenetic remodelling in human hepatocellular carcinoma.

Authors:  Maria Rita Braghini; Oriana Lo Re; Ilaria Romito; Maite G Fernandez-Barrena; Barbara Barbaro; Silvia Pomella; Rossella Rota; Manlio Vinciguerra; Matias A Avila; Anna Alisi
Journal:  J Exp Clin Cancer Res       Date:  2022-03-24

Review 10.  Exploring chromatin structural roles of non-coding RNAs at imprinted domains.

Authors:  David Llères; Yui Imaizumi; Robert Feil
Journal:  Biochem Soc Trans       Date:  2021-08-27       Impact factor: 5.407

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