Literature DB >> 25768911

Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Andreas Doncic1, Oguzhan Atay1, Ervin Valk2, Alicia Grande3, Alan Bush3, Gustavo Vasen3, Alejandro Colman-Lerner3, Mart Loog2, Jan M Skotheim4.   

Abstract

Cells make accurate decisions in the face of molecular noise and environmental fluctuations by relying not only on present pathway activity, but also on their memory of past signaling dynamics. Once a decision is made, cellular transitions are often rapid and switch-like due to positive feedback loops in the regulatory network. While positive feedback loops are good at promoting switch-like transitions, they are not expected to retain information to inform subsequent decisions. However, this expectation is based on our current understanding of network motifs that accounts for temporal, but not spatial, dynamics. Here, we show how spatial organization of the feedback-driven yeast G1/S switch enables the transmission of memory of past pheromone exposure across this transition. We expect this to be one of many examples where the exquisite spatial organization of the eukaryotic cell enables previously well-characterized network motifs to perform new and unexpected signal processing functions.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25768911      PMCID: PMC4377233          DOI: 10.1016/j.cell.2015.02.032

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  60 in total

1.  Spatial positive feedback at the onset of mitosis.

Authors:  Silvia D M Santos; Roy Wollman; Tobias Meyer; James E Ferrell
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

2.  The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch.

Authors:  Qiong Yang; James E Ferrell
Journal:  Nat Cell Biol       Date:  2013-04-28       Impact factor: 28.824

3.  p53 dynamics control cell fate.

Authors:  Jeremy E Purvis; Kyle W Karhohs; Caroline Mock; Eric Batchelor; Alexander Loewer; Galit Lahav
Journal:  Science       Date:  2012-06-15       Impact factor: 47.728

4.  Negative feedback enhances robustness in the yeast polarity establishment circuit.

Authors:  Audrey S Howell; Meng Jin; Chi-Fang Wu; Trevin R Zyla; Timothy C Elston; Daniel J Lew
Journal:  Cell       Date:  2012-04-13       Impact factor: 41.582

5.  Regulation of cyclin-substrate docking by a G1 arrest signaling pathway and the Cdk inhibitor Far1.

Authors:  Patricia A Pope; Samyabrata Bhaduri; Peter M Pryciak
Journal:  Curr Biol       Date:  2014-06-05       Impact factor: 10.834

6.  Distinct interactions select and maintain a specific cell fate.

Authors:  Andreas Doncic; Melody Falleur-Fettig; Jan M Skotheim
Journal:  Mol Cell       Date:  2011-08-19       Impact factor: 17.970

7.  Feedforward regulation ensures stability and rapid reversibility of a cellular state.

Authors:  Andreas Doncic; Jan M Skotheim
Journal:  Mol Cell       Date:  2013-05-16       Impact factor: 17.970

8.  Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks.

Authors:  Michael J Lee; Albert S Ye; Alexandra K Gardino; Anne Margriet Heijink; Peter K Sorger; Gavin MacBeath; Michael B Yaffe
Journal:  Cell       Date:  2012-05-11       Impact factor: 41.582

9.  Checkpoints in a yeast differentiation pathway coordinate signaling during hyperosmotic stress.

Authors:  Michal J Nagiec; Henrik G Dohlman
Journal:  PLoS Genet       Date:  2012-01-05       Impact factor: 5.917

10.  An algorithm to automate yeast segmentation and tracking.

Authors:  Andreas Doncic; Umut Eser; Oguzhan Atay; Jan M Skotheim
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

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  16 in total

1.  Fundamental trade-offs between information flow in single cells and cellular populations.

Authors:  Ryan Suderman; John A Bachman; Adam Smith; Peter K Sorger; Eric J Deeds
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

2.  Mitogen-activated protein kinase (MAPK) dynamics determine cell fate in the yeast mating response.

Authors:  Yang Li; Julie Roberts; Zohreh AkhavanAghdam; Nan Hao
Journal:  J Biol Chem       Date:  2017-11-09       Impact factor: 5.157

3.  A Precise Cdk Activity Threshold Determines Passage through the Restriction Point.

Authors:  Clayton Schwarz; Amy Johnson; Mardo Kõivomägi; Evgeny Zatulovskiy; Carolyn J Kravitz; Andreas Doncic; Jan M Skotheim
Journal:  Mol Cell       Date:  2018-01-18       Impact factor: 17.970

4.  CDK and MAPK Synergistically Regulate Signaling Dynamics via a Shared Multi-site Phosphorylation Region on the Scaffold Protein Ste5.

Authors:  María Victoria Repetto; Matthew J Winters; Alan Bush; Wolfgang Reiter; David Maria Hollenstein; Gustav Ammerer; Peter M Pryciak; Alejandro Colman-Lerner
Journal:  Mol Cell       Date:  2018-03-15       Impact factor: 17.970

5.  Switch-like Transitions Insulate Network Motifs to Modularize Biological Networks.

Authors:  Oguzhan Atay; Andreas Doncic; Jan M Skotheim
Journal:  Cell Syst       Date:  2016-07-21       Impact factor: 10.304

Review 6.  Bistability of somatic pattern memories: stochastic outcomes in bioelectric circuits underlying regeneration.

Authors:  Giovanni Pezzulo; Joshua LaPalme; Fallon Durant; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-02-08       Impact factor: 6.237

7.  Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?

Authors:  Ian A Mellis; Arjun Raj
Journal:  Genome Res       Date:  2015-10       Impact factor: 9.043

8.  Modelling compartmentalization towards elucidation and engineering of spatial organization in biochemical pathways.

Authors:  Govind Menon; Chinedu Okeke; J Krishnan
Journal:  Sci Rep       Date:  2017-09-21       Impact factor: 4.379

Review 9.  Spatial and temporal signal processing and decision making by MAPK pathways.

Authors:  Oguzhan Atay; Jan M Skotheim
Journal:  J Cell Biol       Date:  2017-01-02       Impact factor: 10.539

Review 10.  Single-cell phenomics in budding yeast.

Authors:  Yoshikazu Ohya; Yoshitaka Kimori; Hiroki Okada; Shinsuke Ohnuki
Journal:  Mol Biol Cell       Date:  2015-11-05       Impact factor: 4.138

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