Literature DB >> 23685071

Feedforward regulation ensures stability and rapid reversibility of a cellular state.

Andreas Doncic1, Jan M Skotheim.   

Abstract

Cellular transitions are important for all life. Such transitions, including cell fate decisions, often employ positive feedback regulation to establish and stabilize new cellular states. However, positive feedback is unlikely to underlie stable cell-cycle arrest in yeast exposed to mating pheromone because the signaling pathway is linear, rather than bistable, over a broad range of extracellular pheromone concentration. We show that the stability of the pheromone-arrested state results from coherent feedforward regulation of the cell-cycle inhibitor Far1. This network motif is effectively isolated from the more complex regulatory network in which it is embedded. Fast regulation of Far1 by phosphorylation allows rapid cell-cycle arrest and reentry, whereas slow Far1 synthesis reinforces arrest. We expect coherent feedforward regulation to be frequently implemented at reversible cellular transitions because this network motif can achieve the ostensibly conflicting aims of arrest stability and rapid reversibility without loss of signaling information.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23685071      PMCID: PMC3696412          DOI: 10.1016/j.molcel.2013.04.014

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  56 in total

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2.  Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-17       Impact factor: 11.205

3.  Signal processing by the HOG MAP kinase pathway.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

4.  Positive feedback of G1 cyclins ensures coherent cell cycle entry.

Authors:  Jan M Skotheim; Stefano Di Talia; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2008-07-17       Impact factor: 49.962

5.  Membrane localization of scaffold proteins promotes graded signaling in the yeast MAP kinase cascade.

Authors:  Satoe Takahashi; Peter M Pryciak
Journal:  Curr Biol       Date:  2008-08-26       Impact factor: 10.834

6.  Nucleus-specific and cell cycle-regulated degradation of mitogen-activated protein kinase scaffold protein Ste5 contributes to the control of signaling competence.

Authors:  Lindsay S Garrenton; Andreas Braunwarth; Stefan Irniger; Ed Hurt; Markus Künzler; Jeremy Thorner
Journal:  Mol Cell Biol       Date:  2008-11-10       Impact factor: 4.272

7.  Imaging individual mRNA molecules using multiple singly labeled probes.

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8.  Negative feedback that improves information transmission in yeast signalling.

Authors:  Richard C Yu; C Gustavo Pesce; Alejandro Colman-Lerner; Larry Lok; David Pincus; Eduard Serra; Mark Holl; Kirsten Benjamin; Andrew Gordon; Roger Brent
Journal:  Nature       Date:  2008-12-11       Impact factor: 49.962

9.  A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells.

Authors:  Gilles Charvin; Frederick R Cross; Eric D Siggia
Journal:  PLoS One       Date:  2008-01-23       Impact factor: 3.240

10.  Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation.

Authors:  Attila Csikász-Nagy; Orsolya Kapuy; Attila Tóth; Csaba Pál; Lars Juhl Jensen; Frank Uhlmann; John J Tyson; Béla Novák
Journal:  Mol Syst Biol       Date:  2009-01-20       Impact factor: 11.429

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  31 in total

Review 1.  Topology and control of the cell-cycle-regulated transcriptional circuitry.

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Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

2.  Fundamental trade-offs between information flow in single cells and cellular populations.

Authors:  Ryan Suderman; John A Bachman; Adam Smith; Peter K Sorger; Eric J Deeds
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

3.  Cdc48/p97 segregase is modulated by cyclin-dependent kinase to determine cyclin fate during G1 progression.

Authors:  Eva Parisi; Galal Yahya; Alba Flores; Martí Aldea
Journal:  EMBO J       Date:  2018-06-27       Impact factor: 11.598

4.  Mitogen-activated protein kinase (MAPK) dynamics determine cell fate in the yeast mating response.

Authors:  Yang Li; Julie Roberts; Zohreh AkhavanAghdam; Nan Hao
Journal:  J Biol Chem       Date:  2017-11-09       Impact factor: 5.157

5.  A TORC2-Akt Feed-Forward Topology Underlies HER3 Resiliency in HER2-Amplified Cancers.

Authors:  Dhara N Amin; Deepika Ahuja; Paul Yaswen; Mark M Moasser
Journal:  Mol Cancer Ther       Date:  2015-10-05       Impact factor: 6.261

6.  A Precise Cdk Activity Threshold Determines Passage through the Restriction Point.

Authors:  Clayton Schwarz; Amy Johnson; Mardo Kõivomägi; Evgeny Zatulovskiy; Carolyn J Kravitz; Andreas Doncic; Jan M Skotheim
Journal:  Mol Cell       Date:  2018-01-18       Impact factor: 17.970

7.  Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Authors:  Andreas Doncic; Oguzhan Atay; Ervin Valk; Alicia Grande; Alan Bush; Gustavo Vasen; Alejandro Colman-Lerner; Mart Loog; Jan M Skotheim
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

Review 8.  Cell-Size Control.

Authors:  Amanda A Amodeo; Jan M Skotheim
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-04-01       Impact factor: 10.005

9.  Switch-like Transitions Insulate Network Motifs to Modularize Biological Networks.

Authors:  Oguzhan Atay; Andreas Doncic; Jan M Skotheim
Journal:  Cell Syst       Date:  2016-07-21       Impact factor: 10.304

Review 10.  Genotype to phenotype via network analysis.

Authors:  Hannah Carter; Matan Hofree; Trey Ideker
Journal:  Curr Opin Genet Dev       Date:  2013-11-14       Impact factor: 5.578

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