Literature DB >> 23624406

The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch.

Qiong Yang1, James E Ferrell.   

Abstract

Despite the complexity and variety of biological oscillators, their core design invariably includes an essential negative feedback loop. In the Xenopus laevis embryonic cell cycle oscillator, this loop consists of the kinase cyclin B-Cdk1 and the ubiquitin ligase APC/C(Cdc20); active Cdk1 activates APC/C(Cdc20), which then brings about cyclin B degradation and inactivates Cdk1. Here we ask how this negative feedback loop functions quantitatively, with the aim of understanding what mechanisms keep the Cdk1-APC/C(Cdc20) system from settling into a stable steady state with intermediate levels of Cdk1 and APC/C(Cdc20) activity. We found that the system operates as a time-delayed, digital switch, with a time lag of ∼ 15 min between Cdk1 and APC/C(Cdc20) activation and a tremendously high degree of ultrasensitivity (n(H)≈17). Computational modelling shows how these attributes contribute to the generation of robust, clock-like oscillations. Principles uncovered here may also apply to other activator-repressor oscillators and help in designing robust synthetic clocks.

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Year:  2013        PMID: 23624406      PMCID: PMC3728279          DOI: 10.1038/ncb2737

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  35 in total

1.  Ubiquitination of Cdc20 by the APC occurs through an intramolecular mechanism.

Authors:  Ian T Foe; Scott A Foster; Stephanie K Cheung; Steven Z DeLuca; David O Morgan; David P Toczyski
Journal:  Curr Biol       Date:  2011-11-10       Impact factor: 10.834

2.  Driving the cell cycle with a minimal CDK control network.

Authors:  Damien Coudreuse; Paul Nurse
Journal:  Nature       Date:  2010-12-23       Impact factor: 49.962

3.  A role for the Fizzy/Cdc20 family of proteins in activation of the APC/C distinct from substrate recruitment.

Authors:  Yuu Kimata; Joanne E Baxter; Andrew M Fry; Hiroyuki Yamano
Journal:  Mol Cell       Date:  2008-11-21       Impact factor: 17.970

4.  Regulated activity of PP2A-B55 delta is crucial for controlling entry into and exit from mitosis in Xenopus egg extracts.

Authors:  Satoru Mochida; Satoshi Ikeo; Julian Gannon; Tim Hunt
Journal:  EMBO J       Date:  2009-08-20       Impact factor: 11.598

Review 5.  Cubism and the cell cycle: the many faces of the APC/C.

Authors:  Jonathon Pines
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06-02       Impact factor: 94.444

6.  Ultrasensitivity in the Regulation of Cdc25C by Cdk1.

Authors:  Nicole B Trunnell; Andy C Poon; Sun Young Kim; James E Ferrell
Journal:  Mol Cell       Date:  2011-02-04       Impact factor: 17.970

7.  Progressive activation of CyclinB1-Cdk1 coordinates entry to mitosis.

Authors:  Olivier Gavet; Jonathon Pines
Journal:  Dev Cell       Date:  2010-04-20       Impact factor: 12.270

Review 8.  Design principles of biochemical oscillators.

Authors:  Béla Novák; John J Tyson
Journal:  Nat Rev Mol Cell Biol       Date:  2008-10-30       Impact factor: 94.444

9.  How APC/C-Cdc20 changes its substrate specificity in mitosis.

Authors:  Daisuke Izawa; Jonathon Pines
Journal:  Nat Cell Biol       Date:  2011-02-20       Impact factor: 28.824

10.  Rising cyclin-CDK levels order cell cycle events.

Authors:  Catherine Oikonomou; Frederick R Cross
Journal:  PLoS One       Date:  2011-06-10       Impact factor: 3.240

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  62 in total

1.  Timing of Tissue-specific Cell Division Requires a Differential Onset of Zygotic Transcription during Metazoan Embryogenesis.

Authors:  Ming-Kin Wong; Daogang Guan; Kaoru Hon Chun Ng; Vincy Wing Sze Ho; Xiaomeng An; Runsheng Li; Xiaoliang Ren; Zhongying Zhao
Journal:  J Biol Chem       Date:  2016-04-07       Impact factor: 5.157

2.  Inefficient degradation of cyclin B1 re-activates the spindle checkpoint right after sister chromatid disjunction.

Authors:  Linda Clijsters; Wouter van Zon; Bas Ter Riet; Erik Voets; Michiel Boekhout; Janneke Ogink; Cornelia Rumpf-Kienzl; Rob M F Wolthuis
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

3.  Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling.

Authors:  Jonathan Rodenfels; Karla M Neugebauer; Jonathon Howard
Journal:  Dev Cell       Date:  2019-01-31       Impact factor: 12.270

4.  The Design Space of the Embryonic Cell Cycle Oscillator.

Authors:  Henry H Mattingly; Moshe Sheintuch; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

5.  Bistability, oscillations, and traveling waves in frog egg extracts.

Authors:  John J Tyson; Bela Novak
Journal:  Bull Math Biol       Date:  2014-09-04       Impact factor: 1.758

6.  Phosphorylation-mediated stabilization of Bora in mitosis coordinates Plx1/Plk1 and Cdk1 oscillations.

Authors:  Oren Feine; Elvira Hukasova; Wytse Bruinsma; Raimundo Freire; Abraham Fainsod; Julian Gannon; Hiro M Mahbubani; Arne Lindqvist; Michael Brandeis
Journal:  Cell Cycle       Date:  2014-03-26       Impact factor: 4.534

7.  Cell division: Mitotic regulation comes into focus.

Authors:  David O Morgan
Journal:  Nature       Date:  2016-08-10       Impact factor: 49.962

8.  Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Authors:  Andreas Doncic; Oguzhan Atay; Ervin Valk; Alicia Grande; Alan Bush; Gustavo Vasen; Alejandro Colman-Lerner; Mart Loog; Jan M Skotheim
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

9.  Role for regulated phosphatase activity in generating mitotic oscillations in Xenopus cell-free extracts.

Authors:  Tongli Zhang; John J Tyson; Béla Novák
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

Review 10.  How oocytes try to get it right: spindle checkpoint control in meiosis.

Authors:  Sandra A Touati; Katja Wassmann
Journal:  Chromosoma       Date:  2015-08-11       Impact factor: 4.316

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