Literature DB >> 25755263

Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean.

Hannes Schroeder1, María C Ávila-Arcos2, Anna-Sapfo Malaspinas3, G David Poznik4, Marcela Sandoval-Velasco3, Meredith L Carpenter5, José Víctor Moreno-Mayar3, Martin Sikora2, Philip L F Johnson6, Morten Erik Allentoft3, José Alfredo Samaniego3, Jay B Haviser7, Michael W Dee8, Thomas W Stafford9, Antonio Salas10, Ludovic Orlando3, Eske Willerslev3, Carlos D Bustamante5, M Thomas P Gilbert11.   

Abstract

Between 1500 and 1850, more than 12 million enslaved Africans were transported to the New World. The vast majority were shipped from West and West-Central Africa, but their precise origins are largely unknown. We used genome-wide ancient DNA analyses to investigate the genetic origins of three enslaved Africans whose remains were recovered on the Caribbean island of Saint Martin. We trace their origins to distinct subcontinental source populations within Africa, including Bantu-speaking groups from northern Cameroon and non-Bantu speakers living in present-day Nigeria and Ghana. To our knowledge, these findings provide the first direct evidence for the ethnic origins of enslaved Africans, at a time for which historical records are scarce, and demonstrate that genomic data provide another type of record that can shed new light on long-standing historical questions.

Keywords:  ancient DNA; genomics; slave trade

Mesh:

Substances:

Year:  2015        PMID: 25755263      PMCID: PMC4378422          DOI: 10.1073/pnas.1421784112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe.

Authors:  Pontus Skoglund; Helena Malmström; Maanasa Raghavan; Jan Storå; Per Hall; Eske Willerslev; M Thomas P Gilbert; Anders Götherström; Mattias Jakobsson
Journal:  Science       Date:  2012-04-27       Impact factor: 47.728

2.  Illumina sequencing library preparation for highly multiplexed target capture and sequencing.

Authors:  Matthias Meyer; Martin Kircher
Journal:  Cold Spring Harb Protoc       Date:  2010-06

3.  HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups.

Authors:  Anita Kloss-Brandstätter; Dominic Pacher; Sebastian Schönherr; Hansi Weissensteiner; Robert Binna; Günther Specht; Florian Kronenberg
Journal:  Hum Mutat       Date:  2010-11-16       Impact factor: 4.878

4.  Genome-wide patterns of population structure and admixture in West Africans and African Americans.

Authors:  Katarzyna Bryc; Adam Auton; Matthew R Nelson; Jorge R Oksenberg; Stephen L Hauser; Scott Williams; Alain Froment; Jean-Marie Bodo; Charles Wambebe; Sarah A Tishkoff; Carlos D Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

5.  A high-coverage genome sequence from an archaic Denisovan individual.

Authors:  Matthias Meyer; Martin Kircher; Marie-Theres Gansauge; Heng Li; Fernando Racimo; Swapan Mallick; Joshua G Schraiber; Flora Jay; Kay Prüfer; Cesare de Filippo; Peter H Sudmant; Can Alkan; Qiaomei Fu; Ron Do; Nadin Rohland; Arti Tandon; Michael Siebauer; Richard E Green; Katarzyna Bryc; Adrian W Briggs; Udo Stenzel; Jesse Dabney; Jay Shendure; Jacob Kitzman; Michael F Hammer; Michael V Shunkov; Anatoli P Derevianko; Nick Patterson; Aida M Andrés; Evan E Eichler; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

6.  Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

Authors:  Marie-Theres Gansauge; Matthias Meyer
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

7.  A model-based approach for analysis of spatial structure in genetic data.

Authors:  Wen-Yun Yang; John Novembre; Eleazar Eskin; Eran Halperin
Journal:  Nat Genet       Date:  2012-05-20       Impact factor: 38.330

8.  Inference of population splits and mixtures from genome-wide allele frequency data.

Authors:  Joseph K Pickrell; Jonathan K Pritchard
Journal:  PLoS Genet       Date:  2012-11-15       Impact factor: 5.917

9.  AdapterRemoval: easy cleaning of next-generation sequencing reads.

Authors:  Stinus Lindgreen
Journal:  BMC Res Notes       Date:  2012-07-02

10.  New insights into the Lake Chad Basin population structure revealed by high-throughput genotyping of mitochondrial DNA coding SNPs.

Authors:  María Cerezo; Viktor Černý; Ángel Carracedo; Antonio Salas
Journal:  PLoS One       Date:  2011-04-20       Impact factor: 3.240

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  29 in total

Review 1.  Reconstructing ancient genomes and epigenomes.

Authors:  Ludovic Orlando; M Thomas P Gilbert; Eske Willerslev
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

2.  Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations.

Authors:  Alicia R Martin; Christopher R Gignoux; Raymond K Walters; Genevieve L Wojcik; Benjamin M Neale; Simon Gravel; Mark J Daly; Carlos D Bustamante; Eimear E Kenny
Journal:  Am J Hum Genet       Date:  2017-03-30       Impact factor: 11.025

3.  The Effects of Migration and Assortative Mating on Admixture Linkage Disequilibrium.

Authors:  Noah Zaitlen; Scott Huntsman; Donglei Hu; Melissa Spear; Celeste Eng; Sam S Oh; Marquitta J White; Angel Mak; Adam Davis; Kelly Meade; Emerita Brigino-Buenaventura; Michael A LeNoir; Kirsten Bibbins-Domingo; Esteban G Burchard; Eran Halperin
Journal:  Genetics       Date:  2016-11-22       Impact factor: 4.562

4.  Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.

Authors:  Rosa Fregel; Fernando L Méndez; Youssef Bokbot; Dimas Martín-Socas; María D Camalich-Massieu; Jonathan Santana; Jacob Morales; María C Ávila-Arcos; Peter A Underhill; Beth Shapiro; Genevieve Wojcik; Morten Rasmussen; André E R Soares; Joshua Kapp; Alexandra Sockell; Francisco J Rodríguez-Santos; Abdeslam Mikdad; Aioze Trujillo-Mederos; Carlos D Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-12       Impact factor: 11.205

5.  Genome-wide Ancestry and Demographic History of African-Descendant Maroon Communities from French Guiana and Suriname.

Authors:  Cesar Fortes-Lima; Antoine Gessain; Andres Ruiz-Linares; Maria-Cátira Bortolini; Florence Migot-Nabias; Gil Bellis; J Víctor Moreno-Mayar; Berta Nelly Restrepo; Winston Rojas; Efren Avendaño-Tamayo; Gabriel Bedoya; Ludovic Orlando; Antonio Salas; Agnar Helgason; M Thomas P Gilbert; Martin Sikora; Hannes Schroeder; Jean-Michel Dugoujon
Journal:  Am J Hum Genet       Date:  2017-11-02       Impact factor: 11.025

Review 6.  African genetic diversity provides novel insights into evolutionary history and local adaptations.

Authors:  Ananyo Choudhury; Shaun Aron; Dhriti Sengupta; Scott Hazelhurst; Michèle Ramsay
Journal:  Hum Mol Genet       Date:  2018-08-01       Impact factor: 6.150

7.  Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany.

Authors:  Bastiaan Star; Sanne Boessenkool; Agata T Gondek; Elena A Nikulina; Anne Karin Hufthammer; Christophe Pampoulie; Halvor Knutsen; Carl André; Heidi M Nistelberger; Jan Dierking; Christoph Petereit; Dirk Heinrich; Kjetill S Jakobsen; Nils Chr Stenseth; Sissel Jentoft; James H Barrett
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-07       Impact factor: 11.205

Review 8.  Human evolution: a tale from ancient genomes.

Authors:  Bastien Llamas; Eske Willerslev; Ludovic Orlando
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

Review 9.  Harnessing ancient genomes to study the history of human adaptation.

Authors:  Stephanie Marciniak; George H Perry
Journal:  Nat Rev Genet       Date:  2017-09-11       Impact factor: 53.242

10.  The genomic history of the Aegean palatial civilizations.

Authors:  Florian Clemente; Martina Unterländer; Olga Dolgova; Carlos Eduardo G Amorim; Francisco Coroado-Santos; Samuel Neuenschwander; Elissavet Ganiatsou; Diana I Cruz Dávalos; Lucas Anchieri; Frédéric Michaud; Laura Winkelbach; Jens Blöcher; Yami Ommar Arizmendi Cárdenas; Bárbara Sousa da Mota; Eleni Kalliga; Angelos Souleles; Ioannis Kontopoulos; Georgia Karamitrou-Mentessidi; Olga Philaniotou; Adamantios Sampson; Dimitra Theodorou; Metaxia Tsipopoulou; Ioannis Akamatis; Paul Halstead; Kostas Kotsakis; Dushka Urem-Kotsou; Diamantis Panagiotopoulos; Christina Ziota; Sevasti Triantaphyllou; Olivier Delaneau; Jeffrey D Jensen; J Víctor Moreno-Mayar; Joachim Burger; Vitor C Sousa; Oscar Lao; Anna-Sapfo Malaspinas; Christina Papageorgopoulou
Journal:  Cell       Date:  2021-04-29       Impact factor: 41.582

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