Literature DB >> 27994125

Human evolution: a tale from ancient genomes.

Bastien Llamas1, Eske Willerslev2,3,4, Ludovic Orlando5,6.   

Abstract

The field of human ancient DNA (aDNA) has moved from mitochondrial sequencing that suffered from contamination and provided limited biological insights, to become a fully genomic discipline that is changing our conception of human history. Recent successes include the sequencing of extinct hominins, and true population genomic studies of Bronze Age populations. Among the emerging areas of aDNA research, the analysis of past epigenomes is set to provide more new insights into human adaptation and disease susceptibility through time. Starting as a mere curiosity, ancient human genetics has become a major player in the understanding of our evolutionary history.This article is part of the themed issue 'Evo-devo in the genomics era, and the origins of morphological diversity'.
© 2016 The Author(s).

Entities:  

Keywords:  Archaic hominins; ancient DNA; anthropology; human evolution

Mesh:

Substances:

Year:  2017        PMID: 27994125      PMCID: PMC5182416          DOI: 10.1098/rstb.2015.0484

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  177 in total

1.  Characterization of genetic miscoding lesions caused by postmortem damage.

Authors:  M Thomas P Gilbert; Anders J Hansen; Eske Willerslev; Lars Rudbeck; Ian Barnes; Niels Lynnerup; Alan Cooper
Journal:  Am J Hum Genet       Date:  2002-12-13       Impact factor: 11.025

2.  Rise and fall of the Beringian steppe bison.

Authors:  Beth Shapiro; Alexei J Drummond; Andrew Rambaut; Michael C Wilson; Paul E Matheus; Andrei V Sher; Oliver G Pybus; M Thomas P Gilbert; Ian Barnes; Jonas Binladen; Eske Willerslev; Anders J Hansen; Gennady F Baryshnikov; James A Burns; Sergei Davydov; Jonathan C Driver; Duane G Froese; C Richard Harington; Grant Keddie; Pavel Kosintsev; Michael L Kunz; Larry D Martin; Robert O Stephenson; John Storer; Richard Tedford; Sergei Zimov; Alan Cooper
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

3.  The retrieval of ancient human DNA sequences.

Authors:  O Handt; M Krings; R H Ward; S Pääbo
Journal:  Am J Hum Genet       Date:  1996-08       Impact factor: 11.025

4.  Partial uracil-DNA-glycosylase treatment for screening of ancient DNA.

Authors:  Nadin Rohland; Eadaoin Harney; Swapan Mallick; Susanne Nordenfelt; David Reich
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

5.  Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean.

Authors:  Hannes Schroeder; María C Ávila-Arcos; Anna-Sapfo Malaspinas; G David Poznik; Marcela Sandoval-Velasco; Meredith L Carpenter; José Víctor Moreno-Mayar; Martin Sikora; Philip L F Johnson; Morten Erik Allentoft; José Alfredo Samaniego; Jay B Haviser; Michael W Dee; Thomas W Stafford; Antonio Salas; Ludovic Orlando; Eske Willerslev; Carlos D Bustamante; M Thomas P Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

6.  The genetic prehistory of the New World Arctic.

Authors:  Maanasa Raghavan; Michael DeGiorgio; Anders Albrechtsen; Ida Moltke; Pontus Skoglund; Thorfinn S Korneliussen; Bjarne Grønnow; Martin Appelt; Hans Christian Gulløv; T Max Friesen; William Fitzhugh; Helena Malmström; Simon Rasmussen; Jesper Olsen; Linea Melchior; Benjamin T Fuller; Simon M Fahrni; Thomas Stafford; Vaughan Grimes; M A Priscilla Renouf; Jerome Cybulski; Niels Lynnerup; Marta Mirazon Lahr; Kate Britton; Rick Knecht; Jette Arneborg; Mait Metspalu; Omar E Cornejo; Anna-Sapfo Malaspinas; Yong Wang; Morten Rasmussen; Vibha Raghavan; Thomas V O Hansen; Elza Khusnutdinova; Tracey Pierre; Kirill Dneprovsky; Claus Andreasen; Hans Lange; M Geoffrey Hayes; Joan Coltrain; Victor A Spitsyn; Anders Götherström; Ludovic Orlando; Toomas Kivisild; Richard Villems; Michael H Crawford; Finn C Nielsen; Jørgen Dissing; Jan Heinemeier; Morten Meldgaard; Carlos Bustamante; Dennis H O'Rourke; Mattias Jakobsson; M Thomas P Gilbert; Rasmus Nielsen; Eske Willerslev
Journal:  Science       Date:  2014-08-29       Impact factor: 47.728

7.  Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Authors:  Matthias Meyer; Juan-Luis Arsuaga; Cesare de Filippo; Sarah Nagel; Ayinuer Aximu-Petri; Birgit Nickel; Ignacio Martínez; Ana Gracia; José María Bermúdez de Castro; Eudald Carbonell; Bence Viola; Janet Kelso; Kay Prüfer; Svante Pääbo
Journal:  Nature       Date:  2016-03-14       Impact factor: 49.962

8.  Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.

Authors:  David Gokhman; Eitan Lavi; Kay Prüfer; Mario F Fraga; José A Riancho; Janet Kelso; Svante Pääbo; Eran Meshorer; Liran Carmel
Journal:  Science       Date:  2014-04-17       Impact factor: 47.728

9.  mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.

Authors:  Hákon Jónsson; Aurélien Ginolhac; Mikkel Schubert; Philip L F Johnson; Ludovic Orlando
Journal:  Bioinformatics       Date:  2013-04-23       Impact factor: 6.937

10.  The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:  Kay Prüfer; Fernando Racimo; Nick Patterson; Flora Jay; Sriram Sankararaman; Susanna Sawyer; Anja Heinze; Gabriel Renaud; Peter H Sudmant; Cesare de Filippo; Heng Li; Swapan Mallick; Michael Dannemann; Qiaomei Fu; Martin Kircher; Martin Kuhlwilm; Michael Lachmann; Matthias Meyer; Matthias Ongyerth; Michael Siebauer; Christoph Theunert; Arti Tandon; Priya Moorjani; Joseph Pickrell; James C Mullikin; Samuel H Vohr; Richard E Green; Ines Hellmann; Philip L F Johnson; Hélène Blanche; Howard Cann; Jacob O Kitzman; Jay Shendure; Evan E Eichler; Ed S Lein; Trygve E Bakken; Liubov V Golovanova; Vladimir B Doronichev; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

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  15 in total

1.  A manifesto for palaeodemography in the twenty-first century.

Authors:  Jennifer C French; Philip Riris; Javier Fernandéz-López de Pablo; Sergi Lozano; Fabio Silva
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-11-30       Impact factor: 6.237

2.  Late Bronze Age cultural origins of dairy pastoralism in Mongolia.

Authors:  Ludovic Orlando
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-12       Impact factor: 11.205

3.  Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Authors:  Gabriel Renaud; Kristian Hanghøj; Thorfinn Sand Korneliussen; Eske Willerslev; Ludovic Orlando
Journal:  Genetics       Date:  2019-05-14       Impact factor: 4.562

4.  Perspectives on the history of evo-devo and the contemporary research landscape in the genomics era.

Authors:  Cheryll Tickle; Araxi O Urrutia
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

Review 5.  Harnessing ancient genomes to study the history of human adaptation.

Authors:  Stephanie Marciniak; George H Perry
Journal:  Nat Rev Genet       Date:  2017-09-11       Impact factor: 53.242

Review 6.  Ageing Throughout History: The Evolution of Human Lifespan.

Authors:  Marios Kyriazis
Journal:  J Mol Evol       Date:  2019-06-13       Impact factor: 3.973

7.  Properties of 2-locus genealogies and linkage disequilibrium in temporally structured samples.

Authors:  Arjun Biddanda; Matthias Steinrücken; John Novembre
Journal:  Genetics       Date:  2022-05-05       Impact factor: 4.402

8.  Self-domestication in Homo sapiens: Insights from comparative genomics.

Authors:  Constantina Theofanopoulou; Simone Gastaldon; Thomas O'Rourke; Bridget D Samuels; Pedro Tiago Martins; Francesco Delogu; Saleh Alamri; Cedric Boeckx
Journal:  PLoS One       Date:  2017-10-18       Impact factor: 3.240

9.  Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America.

Authors:  Xavier Roca-Rada; Gustavo Politis; Pablo G Messineo; Nahuel Scheifler; Clara Scabuzzo; Mariela González; Kelly M Harkins; David Reich; Yassine Souilmi; João C Teixeira; Bastien Llamas; Lars Fehren-Schmitz
Journal:  iScience       Date:  2021-05-19

Review 10.  The Small and the Dead: A Review of Ancient DNA Studies Analysing Micromammal Species.

Authors:  Roseina Woods; Melissa M Marr; Selina Brace; Ian Barnes
Journal:  Genes (Basel)       Date:  2017-11-08       Impact factor: 4.096

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