Literature DB >> 25723375

Michael-type cyclizations in lantibiotic biosynthesis are reversible.

Xiao Yang1, Wilfred A van der Donk1.   

Abstract

Lanthipeptides are members of the ribosomally synthesized and post-translationally modified peptides (RiPPs). They are generated in two biosynthetic steps: dehydration of Ser and Thr residues to the corresponding dehydroamino acids and subsequent conjugate addition by the thiol of Cys residues to generate the characteristic lanthionine and methyllanthionine thioether-bridged structures. Typically, a lanthipeptide contains multiple thioether cross-links. Recent studies have proposed that the final ring topology may be under thermodynamic control. If so, then the Michael-type cyclization reaction would need to be reversible, but such reversibility has never been demonstrated. We show here for the class I lanthipeptide cyclase NisC and class II lanthipeptide synthetase HalM2 that, indeed, the conjugate addition reactions are reversible and that the enzymes can open up all thioether rings in their products. We also propose that a His residue that is conserved among the lanthipeptide cyclases acts as the acid or base that protonates or generates the enolate intermediate during thioether ring formation and opening, respectively.

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Year:  2015        PMID: 25723375      PMCID: PMC4433588          DOI: 10.1021/acschembio.5b00007

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  28 in total

1.  Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.

Authors:  Bo Li; Daniel Sher; Libusha Kelly; Yanxiang Shi; Katherine Huang; Patrick J Knerr; Ike Joewono; Doug Rusch; Sallie W Chisholm; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

2.  In vitro biosynthesis of the prepeptide of type-III lantibiotic labyrinthopeptin A2 including formation of a C-C bond as a post-translational modification.

Authors:  Wolfgang M Müller; Timo Schmiederer; Paul Ensle; Roderich D Süssmuth
Journal:  Angew Chem Int Ed Engl       Date:  2010-03-22       Impact factor: 15.336

3.  Transition states and energetics of nucleophilic additions of thiols to substituted α,β-unsaturated ketones: substituent effects involve enone stabilization, product branching, and solvation.

Authors:  Elizabeth H Krenske; Russell C Petter; Zhendong Zhu; K N Houk
Journal:  J Org Chem       Date:  2011-05-16       Impact factor: 4.354

4.  Lantibiotics from Geobacillus thermodenitrificans.

Authors:  Neha Garg; Weixin Tang; Yuki Goto; Satish K Nair; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

5.  Discovery of unique lanthionine synthetases reveals new mechanistic and evolutionary insights.

Authors:  Yuki Goto; Bo Li; Jan Claesen; Yanxiang Shi; Mervyn J Bibb; Wilfred A van der Donk
Journal:  PLoS Biol       Date:  2010-03-23       Impact factor: 8.029

6.  Identification of essential catalytic residues of the cyclase NisC involved in the biosynthesis of nisin.

Authors:  Bo Li; Wilfred A van der Donk
Journal:  J Biol Chem       Date:  2007-05-19       Impact factor: 5.157

7.  Production of lantipeptides in Escherichia coli.

Authors:  Yanxiang Shi; Xiao Yang; Neha Garg; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2010-11-29       Impact factor: 15.419

8.  Mechanistic studies of Ser/Thr dehydration catalyzed by a member of the LanL lanthionine synthetase family.

Authors:  Yuki Goto; Ayşe Okesli; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2011-01-13       Impact factor: 3.162

9.  Distributive and directional behavior of lantibiotic synthetases revealed by high-resolution tandem mass spectrometry.

Authors:  M Violet Lee; Leigh Anne Furgerson Ihnken; Young Ok You; Amanda L McClerren; Wilfred A van der Donk; Neil L Kelleher
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

10.  Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.

Authors:  Weixin Tang; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

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  16 in total

1.  Discovery and Characterization of a Class IV Lanthipeptide with a Nonoverlapping Ring Pattern.

Authors:  Hengqian Ren; Chengyou Shi; Ian R Bothwell; Wilfred A van der Donk; Huimin Zhao
Journal:  ACS Chem Biol       Date:  2020-05-14       Impact factor: 5.100

Review 2.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

3.  O-Methyltransferase-Mediated Incorporation of a β-Amino Acid in Lanthipeptides.

Authors:  Jeella Z Acedo; Ian R Bothwell; Linna An; Abby Trouth; Clara Frazier; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2019-10-15       Impact factor: 15.419

4.  Bulky Dehydroamino Acids Enhance Proteolytic Stability and Folding in β-Hairpin Peptides.

Authors:  Ankur Jalan; David W Kastner; Kei G I Webber; Mason S Smith; Joshua L Price; Steven L Castle
Journal:  Org Lett       Date:  2017-09-14       Impact factor: 6.005

5.  Product Formation by the Promiscuous Lanthipeptide Synthetase ProcM is under Kinetic Control.

Authors:  Yi Yu; Subha Mukherjee; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-04-07       Impact factor: 15.419

6.  Identification of the Catalytic Residues in the Cyclase Domain of the Class IV Lanthipeptide Synthetase SgbL.

Authors:  Julian D Hegemann; Roderich D Süssmuth
Journal:  Chembiochem       Date:  2021-09-12       Impact factor: 3.461

7.  LanCLs add glutathione to dehydroamino acids generated at phosphorylated sites in the proteome.

Authors:  Kuan-Yu Lai; Sébastien R G Galan; Yibo Zeng; Tianhui Hina Zhou; Chang He; Ritu Raj; Jitka Riedl; Shi Liu; K Phin Chooi; Neha Garg; Min Zeng; Lyn H Jones; Graham J Hutchings; Shabaz Mohammed; Satish K Nair; Jie Chen; Benjamin G Davis; Wilfred A van der Donk
Journal:  Cell       Date:  2021-04-30       Impact factor: 41.582

Review 8.  Therapeutic Application of Lantibiotics and Other Lanthipeptides: Old and New Findings.

Authors:  Anton Du Preez van Staden; Winschau F van Zyl; Marla Trindade; Leon M T Dicks; Carine Smith
Journal:  Appl Environ Microbiol       Date:  2021-06-25       Impact factor: 4.792

Review 9.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

Review 10.  Lanthipeptides: chemical synthesis versus in vivo biosynthesis as tools for pharmaceutical production.

Authors:  Elvis Legala Ongey; Peter Neubauer
Journal:  Microb Cell Fact       Date:  2016-06-07       Impact factor: 5.328

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