Literature DB >> 25803126

Product Formation by the Promiscuous Lanthipeptide Synthetase ProcM is under Kinetic Control.

Yi Yu1, Subha Mukherjee1, Wilfred A van der Donk1.   

Abstract

Lanthipeptides are natural products that belong to the family of ribosomally synthesized and post-translationally modified peptides (RiPPs). They contain characteristic lanthionine (Lan) or methyllanthionine (MeLan) structures that contribute to their diverse biological activities. Despite its structurally diverse set of 30 substrates, the highly substrate-tolerant lanthipeptide synthetase ProcM is shown to display high selectivity for formation of a single product from selected substrates. Mutation of the active site zinc ligands to alanine or the unique zinc ligand Cys971 to histidine resulted in a decrease of the cyclization rate, especially for the second cyclization of the substrates ProcA1.1, ProcA2.8, and ProcA3.3. Surprisingly, for ProcA3.3 these mutations also altered the regioselectivity of cyclization resulting in a new major product. ProcM was not able to correct the ring topology of incorrectly cyclized intermediates and products, suggesting that thermodynamic control is not operational. Collectively, the data in this study suggest that the high regioselectivity of product formation is governed by the selectivity of the initially formed ring.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25803126      PMCID: PMC4487812          DOI: 10.1021/jacs.5b01409

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

Review 1.  Zinc-catalyzed sulfur alkyation:insights from protein farnesyltransferase.

Authors:  K E Hightower; C A Fierke
Journal:  Curr Opin Chem Biol       Date:  1999-04       Impact factor: 8.822

2.  Zinc-promoted alkyl transfer: a new role for zinc.

Authors:  James Penner-Hahn
Journal:  Curr Opin Chem Biol       Date:  2007-03-21       Impact factor: 8.822

Review 3.  Insights into the evolution of lanthipeptide biosynthesis.

Authors:  Yi Yu; Qi Zhang; Wilfred A van der Donk
Journal:  Protein Sci       Date:  2013-09-18       Impact factor: 6.725

4.  Evolution of lanthipeptide synthetases.

Authors:  Qi Zhang; Yi Yu; Juan E Vélasquez; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

5.  Mutants of the zinc ligands of lacticin 481 synthetase retain dehydration activity but have impaired cyclization activity.

Authors:  Moushumi Paul; Gregory C Patton; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2007-05-05       Impact factor: 3.162

6.  Identification of essential catalytic residues of the cyclase NisC involved in the biosynthesis of nisin.

Authors:  Bo Li; Wilfred A van der Donk
Journal:  J Biol Chem       Date:  2007-05-19       Impact factor: 5.157

7.  The use of 4-(2-pyridylazo)resorcinol in studies of zinc release from Escherichia coli aspartate transcarbamoylase.

Authors:  J B Hunt; S H Neece; A Ginsburg
Journal:  Anal Biochem       Date:  1985-04       Impact factor: 3.365

8.  Distributive and directional behavior of lantibiotic synthetases revealed by high-resolution tandem mass spectrometry.

Authors:  M Violet Lee; Leigh Anne Furgerson Ihnken; Young Ok You; Amanda L McClerren; Wilfred A van der Donk; Neil L Kelleher
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

9.  Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.

Authors:  Weixin Tang; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

10.  Mechanistic studies on the substrate-tolerant lanthipeptide synthetase ProcM.

Authors:  Subha Mukherjee; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2014-07-08       Impact factor: 15.419

View more
  15 in total

1.  Metabolic model for diversity-generating biosynthesis.

Authors:  Ma Diarey Tianero; Elizabeth Pierce; Shrinivasan Raghuraman; Debosmita Sardar; John A McIntosh; John R Heemstra; Zachary Schonrock; Brett C Covington; J Alan Maschek; James E Cox; Brian O Bachmann; Baldomero M Olivera; Duane E Ruffner; Eric W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

Review 2.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

3.  Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae.

Authors:  Liujie Huo; Xiling Zhao; Jeella Z Acedo; Paola Estrada; Satish K Nair; Wilfred A van der Donk
Journal:  Chembiochem       Date:  2019-11-04       Impact factor: 3.164

Review 4.  Enzymatic Halogenation and Dehalogenation Reactions: Pervasive and Mechanistically Diverse.

Authors:  Vinayak Agarwal; Zachary D Miles; Jaclyn M Winter; Alessandra S Eustáquio; Abrahim A El Gamal; Bradley S Moore
Journal:  Chem Rev       Date:  2017-01-20       Impact factor: 60.622

5.  Trapped Ion Mobility Spectrometry, Ultraviolet Photodissociation, and Time-of-Flight Mass Spectrometry for Gas-Phase Peptide Isobars/Isomers/Conformers Discrimination.

Authors:  Samuel A Miller; Kevin Jeanne Dit Fouque; Mark E Ridgeway; Melvin A Park; Francisco Fernandez-Lima
Journal:  J Am Soc Mass Spectrom       Date:  2022-06-05       Impact factor: 3.262

6.  Leader Peptide Establishes Dehydration Order, Promotes Efficiency, and Ensures Fidelity During Lacticin 481 Biosynthesis.

Authors:  Christopher J Thibodeaux; Joshua Wagoner; Yi Yu; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2016-05-10       Impact factor: 15.419

Review 7.  Crossroads of Antibiotic Resistance and Biosynthesis.

Authors:  Timothy A Wencewicz
Journal:  J Mol Biol       Date:  2019-07-06       Impact factor: 5.469

8.  Substrate Sequence Controls Regioselectivity of Lanthionine Formation by ProcM.

Authors:  Tung Le; Kevin Jeanne Dit Fouque; Miguel Santos-Fernandez; Claudio D Navo; Gonzalo Jiménez-Osés; Raymond Sarksian; Francisco Alberto Fernandez-Lima; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2021-11-01       Impact factor: 15.419

9.  Exploring structural signatures of the lanthipeptide prochlorosin 2.8 using tandem mass spectrometry and trapped ion mobility-mass spectrometry.

Authors:  Kevin Jeanne Dit Fouque; Julian D Hegemann; Miguel Santos-Fernandez; Tung T Le; Mario Gomez-Hernandez; Wilfred A van der Donk; Francisco Fernandez-Lima
Journal:  Anal Bioanal Chem       Date:  2021-06-08       Impact factor: 4.478

10.  Post-translational Introduction of D-Alanine into Ribosomally Synthesized Peptides by the Dehydroalanine Reductase NpnJ.

Authors:  Xiao Yang; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-09-24       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.