Literature DB >> 20479271

Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.

Bo Li1, Daniel Sher, Libusha Kelly, Yanxiang Shi, Katherine Huang, Patrick J Knerr, Ike Joewono, Doug Rusch, Sallie W Chisholm, Wilfred A van der Donk.   

Abstract

Our understanding of secondary metabolite production in bacteria has been shaped primarily by studies of attached varieties such as symbionts, pathogens, and soil bacteria. Here we show that a strain of the single-celled, planktonic marine cyanobacterium Prochlorococcus-which conducts a sizable fraction of photosynthesis in the oceans-produces many cyclic, lanthionine-containing peptides (lantipeptides). Remarkably, in Prochlorococcus MIT9313 a single promiscuous enzyme transforms up to 29 different linear ribosomally synthesized peptides into a library of polycyclic, conformationally constrained products with highly diverse ring topologies. Genes encoding this system are found in variable abundances across the oceans-with a hot spot in a Galapagos hypersaline lagoon-suggesting they play a habitat- and/or community-specific role. The extraordinarily efficient pathway for generating structural diversity enables these cyanobacteria to produce as many secondary metabolites as model antibiotic-producing bacteria, but with much smaller genomes.

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Year:  2010        PMID: 20479271      PMCID: PMC2890784          DOI: 10.1073/pnas.0913677107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

Review 1.  The evolution of secondary metabolism - a unifying model.

Authors:  R D Firn; C G Jones
Journal:  Mol Microbiol       Date:  2000-09       Impact factor: 3.501

2.  Identification of a novel two-peptide lantibiotic, lichenicidin, following rational genome mining for LanM proteins.

Authors:  Máire Begley; Paul D Cotter; Colin Hill; R Paul Ross
Journal:  Appl Environ Microbiol       Date:  2009-06-26       Impact factor: 4.792

3.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

4.  Synthesis of the lantibiotic lactocin S using peptide cyclizations on solid phase.

Authors:  Avena C Ross; Hongqiang Liu; Vijaya R Pattabiraman; John C Vederas
Journal:  J Am Chem Soc       Date:  2010-01-20       Impact factor: 15.419

5.  Discovery of unique lanthionine synthetases reveals new mechanistic and evolutionary insights.

Authors:  Yuki Goto; Bo Li; Jan Claesen; Yanxiang Shi; Mervyn J Bibb; Wilfred A van der Donk
Journal:  PLoS Biol       Date:  2010-03-23       Impact factor: 8.029

6.  Thiostrepton biosynthesis: prototype for a new family of bacteriocins.

Authors:  Wendy L Kelly; Lisa Pan; Chaoxuan Li
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

7.  Chapter 21. In vitro studies of lantibiotic biosynthesis.

Authors:  Bo Li; Lisa E Cooper; Wilfred A van der Donk
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

8.  In vitro mutasynthesis of lantibiotic analogues containing nonproteinogenic amino acids.

Authors:  Matthew R Levengood; Patrick J Knerr; Trent J Oman; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

9.  The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'.

Authors:  Matthew B Sullivan; Bryan Krastins; Jennifer L Hughes; Libusha Kelly; Michael Chase; David Sarracino; Sallie W Chisholm
Journal:  Environ Microbiol       Date:  2009-10-14       Impact factor: 5.491

Review 10.  Follow the leader: the use of leader peptides to guide natural product biosynthesis.

Authors:  Trent J Oman; Wilfred A van der Donk
Journal:  Nat Chem Biol       Date:  2010-01       Impact factor: 15.040

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  124 in total

1.  Requirements of the engineered leader peptide of nisin for inducing modification, export, and cleavage.

Authors:  Annechien Plat; Leon D Kluskens; Anneke Kuipers; Rick Rink; Gert N Moll
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Linking chemistry and genetics in the growing cyanobactin natural products family.

Authors:  Mohamed S Donia; Eric W Schmidt
Journal:  Chem Biol       Date:  2011-04-22

3.  Elucidating the Specificity Determinants of the AtxE2 Lasso Peptide Isopeptidase.

Authors:  Mikhail O Maksimov; Joseph D Koos; Chuhan Zong; Bozhena Lisko; A James Link
Journal:  J Biol Chem       Date:  2015-11-03       Impact factor: 5.157

4.  Metabolic model for diversity-generating biosynthesis.

Authors:  Ma Diarey Tianero; Elizabeth Pierce; Shrinivasan Raghuraman; Debosmita Sardar; John A McIntosh; John R Heemstra; Zachary Schonrock; Brett C Covington; J Alan Maschek; James E Cox; Brian O Bachmann; Baldomero M Olivera; Duane E Ruffner; Eric W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

5.  Michael-type cyclizations in lantibiotic biosynthesis are reversible.

Authors:  Xiao Yang; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2015-03-10       Impact factor: 5.100

Review 6.  Lessons from the past and charting the future of marine natural products drug discovery and chemical biology.

Authors:  William H Gerwick; Bradley S Moore
Journal:  Chem Biol       Date:  2012-01-27

7.  Evolutionary radiation of lanthipeptides in marine cyanobacteria.

Authors:  Andres Cubillos-Ruiz; Jessie W Berta-Thompson; Jamie W Becker; Wilfred A van der Donk; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

Review 8.  Genome mining for ribosomally synthesized natural products.

Authors:  Juan E Velásquez; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2010-11-20       Impact factor: 8.822

9.  Substrate Recognition by the Class II Lanthipeptide Synthetase HalM2.

Authors:  Imran R Rahman; Jeella Z Acedo; Xiaoran Roger Liu; Lingyang Zhu; Justine Arrington; Michael L Gross; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2020-04-28       Impact factor: 5.100

10.  Pseudomycoicidin, a Class II Lantibiotic from Bacillus pseudomycoides.

Authors:  Shradha Basi-Chipalu; Jasmin Dischinger; Michaele Josten; Christiane Szekat; Annegret Zweynert; Hans-Georg Sahl; Gabriele Bierbaum
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

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