Literature DB >> 25697265

Design, synthesis, and protein crystallography of biaryltriazoles as potent tautomerase inhibitors of macrophage migration inhibitory factor.

Pawel Dziedzic1, José A Cisneros, Michael J Robertson, Alissa A Hare, Nadia E Danford, Richard H G Baxter, William L Jorgensen.   

Abstract

Optimization is reported for biaryltriazoles as inhibitors of the tautomerase activity of human macrophage migration inhibitory factor (MIF), a proinflammatory cytokine associated with numerous inflammatory diseases and cancer. A combined approach was taken featuring organic synthesis, enzymatic assaying, crystallography, and modeling including free-energy perturbation (FEP) calculations. X-ray crystal structures for 3a and 3b bound to MIF are reported and provided a basis for the modeling efforts. The accommodation of the inhibitors in the binding site is striking with multiple hydrogen bonds and aryl-aryl interactions. Additional modeling encouraged pursuit of 5-phenoxyquinolinyl analogues, which led to the very potent compound 3s. Activity was further enhanced by addition of a fluorine atom adjacent to the phenolic hydroxyl group as in 3w, 3z, 3aa, and 3bb to strengthen a key hydrogen bond. It is also shown that physical properties of the compounds can be modulated by variation of solvent-exposed substituents. Several of the compounds are likely the most potent known MIF tautomerase inhibitors; the most active ones are more than 1000-fold more active than the well-studied (R)-ISO-1 and more than 200-fold more active than the chromen-4-one Orita-13.

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Year:  2015        PMID: 25697265      PMCID: PMC4386841          DOI: 10.1021/ja512112j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  35 in total

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Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

2.  ISO-1 binding to the tautomerase active site of MIF inhibits its pro-inflammatory activity and increases survival in severe sepsis.

Authors:  Yousef Al-Abed; Darrin Dabideen; Bayan Aljabari; Aline Valster; Davorka Messmer; Mahendar Ochani; Mahira Tanovic; Kanta Ochani; Michael Bacher; Ferdinando Nicoletti; Christine Metz; Valentin A Pavlov; Edmund J Miller; Kevin J Tracey
Journal:  J Biol Chem       Date:  2005-08-22       Impact factor: 5.157

3.  Study of equilibrium solubility measurement by saturation shake-flask method using hydrochlorothiazide as model compound.

Authors:  Edit Baka; John E A Comer; Krisztina Takács-Novák
Journal:  J Pharm Biomed Anal       Date:  2007-11-01       Impact factor: 3.935

Review 4.  Autoimmune diseases: MIF as a therapeutic target.

Authors:  Dorothee Greven; Lin Leng; Richard Bucala
Journal:  Expert Opin Ther Targets       Date:  2010-03       Impact factor: 6.902

5.  Fragment screening of inhibitors for MIF tautomerase reveals a cryptic surface binding site.

Authors:  Larry R McLean; Ying Zhang; Hua Li; Yong-Mi Choi; Zuoning Han; Roy J Vaz; Yi Li
Journal:  Bioorg Med Chem Lett       Date:  2010-02-06       Impact factor: 2.823

Review 6.  The vascular biology of macrophage migration inhibitory factor (MIF). Expression and effects in inflammation, atherogenesis and angiogenesis.

Authors:  Yaw Asare; Martin Schmitt; Jürgen Bernhagen
Journal:  Thromb Haemost       Date:  2013-01-17       Impact factor: 5.249

7.  Discovery of human macrophage migration inhibitory factor (MIF)-CD74 antagonists via virtual screening.

Authors:  Zoe Cournia; Lin Leng; Sunilkumar Gandavadi; Xin Du; Richard Bucala; William L Jorgensen
Journal:  J Med Chem       Date:  2009-01-22       Impact factor: 7.446

8.  Optimization of diarylazines as anti-HIV agents with dramatically enhanced solubility.

Authors:  Mariela Bollini; José A Cisneros; Krasimir A Spasov; Karen S Anderson; William L Jorgensen
Journal:  Bioorg Med Chem Lett       Date:  2013-07-08       Impact factor: 2.823

Review 9.  Current developments of macrophage migration inhibitory factor (MIF) inhibitors.

Authors:  Lei Xu; Youyong Li; Huiyong Sun; Xuechu Zhen; Chunhua Qiao; Sheng Tian; Tingjun Hou
Journal:  Drug Discov Today       Date:  2013-03-04       Impact factor: 7.851

10.  Cooperative effects and optimal halogen bonding motifs for self-assembling systems.

Authors:  Xin Cindy Yan; Patric Schyman; William L Jorgensen
Journal:  J Phys Chem A       Date:  2014-04-08       Impact factor: 2.781

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  16 in total

Review 1.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

2.  Absolute Free Energy of Binding Calculations for Macrophage Migration Inhibitory Factor in Complex with a Druglike Inhibitor.

Authors:  Yue Qian; Israel Cabeza de Vaca; Jonah Z Vilseck; Daniel J Cole; Julian Tirado-Rives; William L Jorgensen
Journal:  J Phys Chem B       Date:  2019-10-07       Impact factor: 2.991

3.  Robust Free Energy Perturbation Protocols for Creating Molecules in Solution.

Authors:  Israel Cabeza de Vaca; Ricardo Zarzuela; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2019-06-24       Impact factor: 6.006

4.  Optimization of Pyrazoles as Phenol Surrogates to Yield Potent Inhibitors of Macrophage Migration Inhibitory Factor.

Authors:  Vinay Trivedi-Parmar; Michael J Robertson; José A Cisneros; Stefan G Krimmer; William L Jorgensen
Journal:  ChemMedChem       Date:  2018-04-23       Impact factor: 3.466

5.  Advances and Insights for Small Molecule Inhibition of Macrophage Migration Inhibitory Factor.

Authors:  Vinay Trivedi-Parmar; William L Jorgensen
Journal:  J Med Chem       Date:  2018-06-04       Impact factor: 7.446

6.  Adding a Hydrogen Bond May Not Help: Naphthyridinone vs Quinoline Inhibitors of Macrophage Migration Inhibitory Factor.

Authors:  Thomas K Dawson; Pawel Dziedzic; Michael J Robertson; José A Cisneros; Stefan G Krimmer; Ana S Newton; Julian Tirado-Rives; William L Jorgensen
Journal:  ACS Med Chem Lett       Date:  2017-11-14       Impact factor: 4.345

7.  Systematic Study of Effects of Structural Modifications on the Aqueous Solubility of Drug-like Molecules.

Authors:  José A Cisneros; Michael J Robertson; Brandon Q Mercado; William L Jorgensen
Journal:  ACS Med Chem Lett       Date:  2016-12-01       Impact factor: 4.345

8.  Relative Binding Free Energy Calculations Applied to Protein Homology Models.

Authors:  Daniel Cappel; Michelle Lynn Hall; Eelke B Lenselink; Thijs Beuming; Jun Qi; James Bradner; Woody Sherman
Journal:  J Chem Inf Model       Date:  2016-11-18       Impact factor: 4.956

9.  Discovery of chromenes as inhibitors of macrophage migration inhibitory factor.

Authors:  Tjie Kok; Hannah Wapenaar; Kan Wang; Constantinos G Neochoritis; Tryfon Zarganes-Tzitzikas; Giordano Proietti; Nikolaos Eleftheriadis; Katarzyna Kurpiewska; Justyna Kalinowska-Tłuścik; Robbert H Cool; Gerrit J Poelarends; Alexander Dömling; Frank J Dekker
Journal:  Bioorg Med Chem       Date:  2017-12-24       Impact factor: 3.641

10.  A Fluorescence Polarization Assay for Binding to Macrophage Migration Inhibitory Factor and Crystal Structures for Complexes of Two Potent Inhibitors.

Authors:  José A Cisneros; Michael J Robertson; Margarita Valhondo; William L Jorgensen
Journal:  J Am Chem Soc       Date:  2016-06-28       Impact factor: 15.419

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