| Literature DB >> 24678636 |
Xin Cindy Yan1, Patric Schyman, William L Jorgensen.
Abstract
Halogen bonding, due to its directionality and tunable strength, is being increasingly utilized in self-assembling materials and crystal engineering. Using density functional theory (DFT) and molecular mechanics (OPLS/CM1Ax) calculations, multiply halogen bonded complexes of brominated imidazole and pyridine are investigated along with their potential in construction of self-assembling architectures. Dimers with 1-10 halogen bonds are considered and reveal maximal binding energies of 3-36 kcal/mol. Cooperative (nonadditive) effects are found in complexes that extend both along and perpendicular to the halogen bonding axes, with interaction energies depending on polarization, secondary interactions, and ring spacers. Four structural motifs were identified to yield optimal halogen bonding. For the largest systems, the excellent agreement found between the DFT and OPLS/CM1Ax results supports the utility of the latter approach for analysis and design of self-assembling supramolecular structures.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24678636 PMCID: PMC3993918 DOI: 10.1021/jp501553j
Source DB: PubMed Journal: J Phys Chem A ISSN: 1089-5639 Impact factor: 2.781
Figure 1Optimized geometries of linear chains for tetramers of 4-bromopyridine (1) and 1-bromo-1H-imidazole (2).
Average Halogen Bond Lengths, ⟨RXB⟩, Binding Energies, −ΔEbind, Average Halogen Bonding Energies, ⟨−EXB⟩, and Average Cooperative Energies, ⟨Ecoop⟩ for the Linear Oligomersa
| ⟨ | –Δ | ⟨− | ⟨ | |
|---|---|---|---|---|
| Compound | ||||
| 2 | 3.051 | 2.94 (2.71) | 2.94 | |
| 3 | 3.039 (−0.4%) | 6.02 (5.54) | 3.01 (2.6%) | –0.15 |
| 4 | 3.034 (−0.5%) | 9.15 (8.41) | 3.05 (3.8%) | –0.17 |
| 5 | 3.033 (−0.6%) | 12.28 (11.07) | 3.07 (4.6%) | –0.18 |
| 6 | 3.031 (−0.7%) | 15.42 (13.91) | 3.08 (5.0%) | –0.19 |
| Compound | ||||
| 2 | 2.674 | 8.31 (7.55) | 8.31 | |
| 3 | 2.608 (−2.4%) | 18.27 (16.73) | 9.13 (9.9%) | –1.64 |
| 4 | 2.567 (−4.0%) | 28.97 (26.44) | 9.66 (16.2%) | –2.02 |
| 5 | 2.535 (−5.2%) | 40.08 (36.77) | 10.02 (20.6%) | –2.28 |
| 6 | 2.514 (−6.0%) | 51.48 (47.33) | 10.30 (23.9%) | –2.48 |
Distances in angstroms; energies in kilocalories per mole.
Percentage change compared to the dimer.
The energy difference between the optimized complex and separated monomers including zero-point energy corrections.
Many-Body Decomposition of the Interaction Energy for the Trimers and Tetramersa
| two-body | three-body | four-body | |
|---|---|---|---|
| Compound | |||
| 3 | –5.94 (97.6%) | –0.15 (2.4%) | |
| 4 | –8.93 (96.4%) | –0.32 (3.4%) | –0.02 (0.2%) |
| Compound | |||
| 3 | –17.45 (91.2%) | –1.68 (8.8%) | |
| 4 | –26.29 (85.7%) | –4.05 (13.2%) | –0.34 (1.1%) |
Energies in kilocalories per mole including counterpoise corrections.
Percentage of the total interaction energy.
Calculated Average Dipole Moments, ⟨μ⟩, Cooperative Dipole Moments, ⟨μcoop⟩, Average nN → σ*C–Br Charge Transfer, ⟨qCT⟩, and Average Delocalization Energies, ⟨E(2)⟩a
| ⟨μ⟩ | ⟨μcoop⟩ | ⟨ | ⟨ | |
|---|---|---|---|---|
| Compound | ||||
| 2 | 1.33 | 1.20 | 0.0077 | 2.98 |
| 3 | 1.59 | 1.29 | 0.0083 | 3.12 |
| 4 | 1.73 | 1.34 | 0.0085 | 3.17 |
| 5 | 1.82 | 1.37 | 0.0085 | 3.19 |
| 6 | 1.88 | 1.38 | 0.0086 | 3.24 |
| Compound | ||||
| 2 | 4.15 | 2.62 | 0.0341 | 12.53 |
| 3 | 4.86 | 3.03 | 0.0450 | 15.98 |
| 4 | 5.44 | 3.47 | 0.0526 | 18.77 |
| 5 | 5.84 | 3.75 | 0.0601 | 21.26 |
| 6 | 6.17 | 4.00 | 0.0664 | 23.22 |
Dipole moments in Debyes; transferred charges in e; energies in kilocalories per mole.
Figure 2Correlations of the average halogen bonding energy (⟨EXB⟩, kcal/mol) with the average dipole moment (debyes) and average amount of charge transferred (e) for linear oligomers of (4-bromopyridine)2–6 on the left and (1-bromo-1H-imidazole)2–6 on the right.
Figure 3Halogen-bonded complexes for haloazines.
Average Halogen Bond Lengths, ⟨RXB⟩, Binding Energies, −ΔEbind, Average Halogen Bonding Energies, ⟨−EXB⟩, and Average Cooperative Energies, ⟨Ecoop⟩ in Multiply Halogen Bonded Systemsa
| complex | ⟨ | –Δ | ⟨− | ⟨ |
|---|---|---|---|---|
| 3.051 | 2.94 (2.71) | 2.94 | ||
| 3.092 | 6.60 (5.77) | 3.30 (12.5%) | –0.73 | |
| 3.093 | 10.18 (9.68) | 3.39 (15.6%) | –0.69 | |
| 3.115 | 1.76 | 1.76 | ||
| (a) | 3.108 (3.100) | 22.18 | 1.85 | –0.09 |
| (b) | 3.111 (3.116) | |||
| 3.341 | 3.00 | 1.50 | ||
| (a) | 3.172 (3.207) | 10.81 | 1.54 | n.d. |
| (b) | 3.320 (3.332) | |||
| 3.376 | 3.37 (3.10) | 1.68 (−42.7%) | 2.51 | |
| 3.098 | 6.27 (5.82) | 3.13 (6.7%) | –0.39 | |
| 3.231 | 3.55 (3.10) | 1.77 (−39.6%) | 2.33 | |
| 3.098 | 5.60 (5.19) | 2.80 (−4.7%) | 0.28 | |
| 3.104 | 7.16 (7.00) | 3.58 (21.9%) | –1.28 | |
| 3.085 | 11.34 (10.65) | 3.78 (28.7%) | –1.26 |
Distances in Ångstroms; energies in kilocalories per mole.
Halogen bond lengths in the crystal structures from ref (32).
Including zero-point energy corrections.
Percentage increase compared to 3a.
Not determined.
Figure 4Six alternative doubly halogen bonded complexes with their computed binding energies −ΔEbind (kcal/mol) from M06-2X/6-31+G(d,p)-LanL2DZdp-PP calculations. Primary interactions are indicated with solid lines and secondary ones are shown with dashed lines. Blue and red colors tentatively assign attractive and repulsive interactions, respectively.
Average Halogen Bond Lengths, ⟨RXB⟩, Binding Energies, −ΔEbind, Average Halogen Bonding Energies, ⟨−EXB⟩, and Average Cooperative Energies, ⟨Ecoop⟩ in Doubly Halogen Bonded Systemsa
| complex | ⟨ | –Δ | ⟨− | ⟨ |
|---|---|---|---|---|
| 3.092 | 6.60 (5.77) | 3.30 | –0.73 | |
| 3.114 | 5.70 (5.30) | 2.85 | 0.17 | |
| 3.085 | 5.28 (4.87) | 2.64 | 0.59 | |
| 3.076 | 6.40 (6.01) | 3.20 | –0.53 | |
| 3.114 | 6.79 (6.39) | 3.40 | –0.92 | |
| 3.066 | 7.03 (6.45) | 3.52 | –1.16 | |
| 3.093 | 6.06 (5.70) | 3.03 | –0.19 |
Distances in Ångstroms; energies in kilocalories per mole.
Including zero-point energy corrections.
Figure 5Supramolecular tubes can be assembled from cylindrical belts using six (5a) or ten (5c) halogen bonds at each interface.
Energetic Results (kcal/mol) for Halogen-Bonded Dimers Using OPLS/CM1Ax Force Fields and DFT Calculations
| OPLS/CM1Ax | OPLS/CM1AxP | DFT | ||||
|---|---|---|---|---|---|---|
| complex | –Δ | ⟨− | –Δ | ⟨− | –Δ | ⟨− |
| 6.07 | 3.04 | 6.61 | 3.30 | 6.60 | 3.30 | |
| 9.50 | 3.17 | 10.35 | 3.45 | 10.18 | 3.39 | |
| 23.03 | 3.84 | 25.33 | 4.22 | 19.46 | 3.24 | |
| 20.05 | 3.34 | |||||
| 28.59 | 3.57 | 31.42 | 3.93 | 27.23 | 3.40 | |
| 35.66 | 3.57 | 39.31 | 3.93 | 34.55 | 3.46 | |
Using M06-2x//ωB97X with the 6-31+G(d,p)-LanL2DZdp-PP basis set.
Using M06-2x//B97-1 with the 6-31G(d,p)-LanL2DZdp-PP basis set.
Using M06L/6-31G(d,p)-LanL2DZdp-PP//BLYP/6-31G(d)-LanL2DZdp-PP.