Literature DB >> 25684364

A platform for rapid exploration of aging and diseases in a naturally short-lived vertebrate.

Itamar Harel1, Bérénice A Benayoun1, Ben Machado1, Param Priya Singh1, Chi-Kuo Hu1, Matthew F Pech2, Dario Riccardo Valenzano1, Elisa Zhang1, Sabrina C Sharp1, Steven E Artandi3, Anne Brunet4.   

Abstract

VIDEO ABSTRACT: Aging is a complex process that affects multiple organs. Modeling aging and age-related diseases in the lab is challenging because classical vertebrate models have relatively long lifespans. Here, we develop the first platform for rapid exploration of age-dependent traits and diseases in vertebrates, using the naturally short-lived African turquoise killifish. We provide an integrative genomic and genome-editing toolkit in this organism using our de-novo-assembled genome and the CRISPR/Cas9 technology. We mutate many genes encompassing the hallmarks of aging, and for a subset, we produce stable lines within 2-3 months. As a proof of principle, we show that fish deficient for the protein subunit of telomerase exhibit the fastest onset of telomere-related pathologies among vertebrates. We further demonstrate the feasibility of creating specific genetic variants. This genome-to-phenotype platform represents a unique resource for studying vertebrate aging and disease in a high-throughput manner and for investigating candidates arising from human genome-wide studies.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25684364      PMCID: PMC4344913          DOI: 10.1016/j.cell.2015.01.038

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  52 in total

Review 1.  Social control of the brain.

Authors:  Russell D Fernald
Journal:  Annu Rev Neurosci       Date:  2012-04-12       Impact factor: 12.449

2.  Temperature affects longevity and age-related locomotor and cognitive decay in the short-lived fish Nothobranchius furzeri.

Authors:  Dario R Valenzano; Eva Terzibasi; Antonino Cattaneo; Luciano Domenici; Alessandro Cellerino
Journal:  Aging Cell       Date:  2006-06       Impact factor: 9.304

3.  Cats, "rats," and bats: the comparative biology of aging in the 21st century.

Authors:  Steven N Austad
Journal:  Integr Comp Biol       Date:  2010-09-16       Impact factor: 3.326

4.  A microinjection protocol for the generation of transgenic killifish (Species: Nothobranchius furzeri).

Authors:  Nils Hartmann; Christoph Englert
Journal:  Dev Dyn       Date:  2012-04-26       Impact factor: 3.780

Review 5.  Genetics of proliferative aging.

Authors:  Theresa Zucchero; Shawn Ahmed
Journal:  Exp Gerontol       Date:  2006-10-17       Impact factor: 4.032

Review 6.  Cancer in dyskeratosis congenita.

Authors:  Blanche P Alter; Neelam Giri; Sharon A Savage; Philip S Rosenberg
Journal:  Blood       Date:  2009-03-12       Impact factor: 22.113

7.  Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.

Authors:  Marcel H Schulz; Daniel R Zerbino; Martin Vingron; Ewan Birney
Journal:  Bioinformatics       Date:  2012-02-24       Impact factor: 6.937

8.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

9.  The genomic basis of adaptive evolution in threespine sticklebacks.

Authors:  Felicity C Jones; Manfred G Grabherr; Yingguang Frank Chan; Pamela Russell; Evan Mauceli; Jeremy Johnson; Ross Swofford; Mono Pirun; Michael C Zody; Simon White; Ewan Birney; Stephen Searle; Jeremy Schmutz; Jane Grimwood; Mark C Dickson; Richard M Myers; Craig T Miller; Brian R Summers; Anne K Knecht; Shannon D Brady; Haili Zhang; Alex A Pollen; Timothy Howes; Chris Amemiya; Jen Baldwin; Toby Bloom; David B Jaffe; Robert Nicol; Jane Wilkinson; Eric S Lander; Federica Di Palma; Kerstin Lindblad-Toh; David M Kingsley
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

10.  Large differences in aging phenotype between strains of the short-lived annual fish Nothobranchius furzeri.

Authors:  Eva Terzibasi; Dario Riccardo Valenzano; Mauro Benedetti; Paola Roncaglia; Antonino Cattaneo; Luciano Domenici; Alessandro Cellerino
Journal:  PLoS One       Date:  2008-12-04       Impact factor: 3.240

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  71 in total

1.  Comparative analysis of metabolic and transcriptomic features of Nothobranchius furzeri.

Authors:  Maria Rita Fumagalli; Francesc Font-Clos; Simone Milan; Stefano Zapperi; Caterina A M La Porta
Journal:  J R Soc Interface       Date:  2020-07-01       Impact factor: 4.118

2.  Vertebrate diapause preserves organisms long term through Polycomb complex members.

Authors:  Wei Wang; Julie Brind'Amour; Chi-Kuo Hu; Param Priya Singh; G Adam Reeves; Matthew C Lorincz; Alejandro Sánchez Alvarado; Anne Brunet
Journal:  Science       Date:  2020-02-21       Impact factor: 47.728

Review 3.  Programming and Reprogramming Cellular Age in the Era of Induced Pluripotency.

Authors:  Lorenz Studer; Elsa Vera; Daniela Cornacchia
Journal:  Cell Stem Cell       Date:  2015-06-04       Impact factor: 24.633

4.  The big, the bad and the ugly: Extreme animals as inspiration for biomedical research.

Authors:  João Pedro de Magalhães
Journal:  EMBO Rep       Date:  2015-06-03       Impact factor: 8.807

5.  Model organisms: Short-lived excitement.

Authors:  Michael Eisenstein
Journal:  Nat Methods       Date:  2015-04       Impact factor: 28.547

6.  Transcriptome analysis for identifying possible causes of post-reproductive death of Sepia esculenta based on brain tissue.

Authors:  Jinyong Zhang; Muchun He; Zilong Xiang; Shufang Liu; ZhiMeng Zhuang
Journal:  Genes Genomics       Date:  2019-04-02       Impact factor: 1.839

Review 7.  Genome and Epigenome Editing in Mechanistic Studies of Human Aging and Aging-Related Disease.

Authors:  Cia-Hin Lau; Yousin Suh
Journal:  Gerontology       Date:  2016-12-15       Impact factor: 5.140

8.  Live fast, die young.

Authors:  Amber Dance
Journal:  Nature       Date:  2016-07-21       Impact factor: 49.962

9.  Short-lived fish may hold clues to human ageing.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2015-12-10       Impact factor: 49.962

Review 10.  Applications of CRISPR-Cas systems in neuroscience.

Authors:  Matthias Heidenreich; Feng Zhang
Journal:  Nat Rev Neurosci       Date:  2015-12-10       Impact factor: 34.870

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