Literature DB >> 32603650

Comparative analysis of metabolic and transcriptomic features of Nothobranchius furzeri.

Maria Rita Fumagalli1,2, Francesc Font-Clos3, Simone Milan2, Stefano Zapperi3,4, Caterina A M La Porta1,2,5.   

Abstract

Some species have a longer lifespan than others, but usually lifespan is correlated with typical body weight. Here, we study the lifetime evolution of the metabolic behaviour of Nothobranchius furzeri, a killifish with an extremely short lifespan with respect to other fishes, even when taking into account rescaling by body weight. Comparison of the gene expression patterns of N. furzeri with those of zebrafish Danio rerio and mouse (Mus musculus) shows that a broad set of metabolic genes and pathways are affected in N. furzeri during ageing in a way that is consistent with a global deregulation of chromatin. Computational analysis of the glycolysis pathway for the three species highlights a rapid increase in the metabolic activity during the lifetime of N. furzeri with respect to the other species. Our results highlight that the unusually short lifespan of N. furzeri is associated with peculiar patterns in the metabolic activities and in chromatin dynamics.

Entities:  

Keywords:  ageing; chromatin; metabolism

Mesh:

Year:  2020        PMID: 32603650      PMCID: PMC7423413          DOI: 10.1098/rsif.2020.0217

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  32 in total

1.  Live fast, die young.

Authors:  Amber Dance
Journal:  Nature       Date:  2016-07-21       Impact factor: 49.962

2.  Age at sexual maturity and its relationship to longevity in the male annual cyprinodont fish, Nothobranchius guenther.

Authors:  J Markofsky; A Perlmutter
Journal:  Exp Gerontol       Date:  1972-04       Impact factor: 4.032

3.  Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.

Authors:  Mihaela Pertea; Daehwan Kim; Geo M Pertea; Jeffrey T Leek; Steven L Salzberg
Journal:  Nat Protoc       Date:  2016-08-11       Impact factor: 13.491

4.  NCBI GEO: archive for functional genomics data sets--10 years on.

Authors:  Tanya Barrett; Dennis B Troup; Stephen E Wilhite; Pierre Ledoux; Carlos Evangelista; Irene F Kim; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Rolf N Muertter; Michelle Holko; Oluwabukunmi Ayanbule; Andrey Yefanov; Alexandra Soboleva
Journal:  Nucleic Acids Res       Date:  2010-11-21       Impact factor: 16.971

5.  Human Ageing Genomic Resources: new and updated databases.

Authors:  Robi Tacutu; Daniel Thornton; Emily Johnson; Arie Budovsky; Diogo Barardo; Thomas Craig; Eugene Diana; Gilad Lehmann; Dmitri Toren; Jingwei Wang; Vadim E Fraifeld; João P de Magalhães
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

6.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

7.  Large differences in aging phenotype between strains of the short-lived annual fish Nothobranchius furzeri.

Authors:  Eva Terzibasi; Dario Riccardo Valenzano; Mauro Benedetti; Paola Roncaglia; Antonino Cattaneo; Luciano Domenici; Alessandro Cellerino
Journal:  PLoS One       Date:  2008-12-04       Impact factor: 3.240

8.  Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.

Authors:  Katleen De Preter; Roland Barriot; Frank Speleman; Jo Vandesompele; Yves Moreau
Journal:  Nucleic Acids Res       Date:  2008-03-16       Impact factor: 16.971

9.  The Polycomb Group Protein Pcgf1 Is Dispensable in Zebrafish but Involved in Early Growth and Aging.

Authors:  Barbara Dupret; Pamela Völkel; Xuefen Le Bourhis; Pierre-Olivier Angrand
Journal:  PLoS One       Date:  2016-07-21       Impact factor: 3.240

10.  The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.

Authors:  Adrian M Altenhoff; Natasha M Glover; Clément-Marie Train; Klara Kaleb; Alex Warwick Vesztrocy; David Dylus; Tarcisio M de Farias; Karina Zile; Charles Stevenson; Jiao Long; Henning Redestig; Gaston H Gonnet; Christophe Dessimoz
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

View more
  2 in total

1.  Age-Dependent Regulation of Notch Family Members in the Neuronal Stem Cell Niches of the Short-Lived Killifish Nothobranchius furzeri.

Authors:  Sara Bagnoli; Eva Terzibasi Tozzini
Journal:  Front Cell Dev Biol       Date:  2021-07-09

Review 2.  Alternative Animal Models of Aging Research.

Authors:  Susanne Holtze; Ekaterina Gorshkova; Stan Braude; Alessandro Cellerino; Philip Dammann; Thomas B Hildebrandt; Andreas Hoeflich; Steve Hoffmann; Philipp Koch; Eva Terzibasi Tozzini; Maxim Skulachev; Vladimir P Skulachev; Arne Sahm
Journal:  Front Mol Biosci       Date:  2021-05-17
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.