Literature DB >> 29714358

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

Ipek Oguz1, Aaron Carass2,3, Dzung L Pham4, Snehashis Roy4, Nagesh Subbana1, Peter A Calabresi5, Paul A Yushkevich1, Russell T Shinohara6, Jerry L Prince2,3.   

Abstract

The Dice overlap ratio is commonly used to evaluate the performance of image segmentation algorithms. While Dice overlap is very useful as a standardized quantitative measure of segmentation accuracy in many applications, it offers a very limited picture of segmentation quality in complex segmentation tasks where the number of target objects is not known a priori, such as the segmentation of white matter lesions or lung nodules. While Dice overlap can still be used in these applications, segmentation algorithms may perform quite differently in ways not reflected by differences in their Dice score. Here we propose a new set of evaluation techniques that offer new insights into the behavior of segmentation algorithms. We illustrate these techniques with a case study comparing two popular multiple sclerosis (MS) lesion segmentation algorithms: OASIS and LesionTOADS.

Entities:  

Keywords:  Evaluation; Lesion; MS; Segmentation

Year:  2018        PMID: 29714358      PMCID: PMC5920690          DOI: 10.1007/978-3-319-75238-9_1

Source DB:  PubMed          Journal:  Brainlesion


  15 in total

1.  Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Authors:  Aaron Carass; Snehashis Roy; Amod Jog; Jennifer L Cuzzocreo; Elizabeth Magrath; Adrian Gherman; Julia Button; James Nguyen; Ferran Prados; Carole H Sudre; Manuel Jorge Cardoso; Niamh Cawley; Olga Ciccarelli; Claudia A M Wheeler-Kingshott; Sébastien Ourselin; Laurence Catanese; Hrishikesh Deshpande; Pierre Maurel; Olivier Commowick; Christian Barillot; Xavier Tomas-Fernandez; Simon K Warfield; Suthirth Vaidya; Abhijith Chunduru; Ramanathan Muthuganapathy; Ganapathy Krishnamurthi; Andrew Jesson; Tal Arbel; Oskar Maier; Heinz Handels; Leonardo O Iheme; Devrim Unay; Saurabh Jain; Diana M Sima; Dirk Smeets; Mohsen Ghafoorian; Bram Platel; Ariel Birenbaum; Hayit Greenspan; Pierre-Louis Bazin; Peter A Calabresi; Ciprian M Crainiceanu; Lotta M Ellingsen; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2017-01-11       Impact factor: 6.556

2.  MRI time series modeling of MS lesion development.

Authors:  Dominik S Meier; Charles R G Guttmann
Journal:  Neuroimage       Date:  2006-06-27       Impact factor: 6.556

3.  Temporally consistent probabilistic detection of new multiple sclerosis lesions in brain MRI.

Authors:  Colm Elliott; Douglas L Arnold; D Louis Collins; Tal Arbel
Journal:  IEEE Trans Med Imaging       Date:  2013-04-16       Impact factor: 10.048

4.  Image similarity and tissue overlaps as surrogates for image registration accuracy: widely used but unreliable.

Authors:  Torsten Rohlfing
Journal:  IEEE Trans Med Imaging       Date:  2011-08-08       Impact factor: 10.048

5.  A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation.

Authors:  Xavier Tomas-Fernandez; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2015-01-19       Impact factor: 10.048

6.  A topology-preserving approach to the segmentation of brain images with multiple sclerosis lesions.

Authors:  Navid Shiee; Pierre-Louis Bazin; Arzu Ozturk; Daniel S Reich; Peter A Calabresi; Dzung L Pham
Journal:  Neuroimage       Date:  2009-09-17       Impact factor: 6.556

7.  ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI.

Authors:  Bjoern H Menze; Heinz Handels; Mauricio Reyes; Oskar Maier; Janina von der Gablentz; Levin Ḧani; Mattias P Heinrich; Matthias Liebrand; Stefan Winzeck; Abdul Basit; Paul Bentley; Liang Chen; Daan Christiaens; Francis Dutil; Karl Egger; Chaolu Feng; Ben Glocker; Michael Götz; Tom Haeck; Hanna-Leena Halme; Mohammad Havaei; Khan M Iftekharuddin; Pierre-Marc Jodoin; Konstantinos Kamnitsas; Elias Kellner; Antti Korvenoja; Hugo Larochelle; Christian Ledig; Jia-Hong Lee; Frederik Maes; Qaiser Mahmood; Klaus H Maier-Hein; Richard McKinley; John Muschelli; Chris Pal; Linmin Pei; Janaki Raman Rangarajan; Syed M S Reza; David Robben; Daniel Rueckert; Eero Salli; Paul Suetens; Ching-Wei Wang; Matthias Wilms; Jan S Kirschke; Ulrike M Kr Amer; Thomas F Münte; Peter Schramm; Roland Wiest
Journal:  Med Image Anal       Date:  2016-07-21       Impact factor: 8.545

8.  OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI.

Authors:  Elizabeth M Sweeney; Russell T Shinohara; Navid Shiee; Farrah J Mateen; Avni A Chudgar; Jennifer L Cuzzocreo; Peter A Calabresi; Dzung L Pham; Daniel S Reich; Ciprian M Crainiceanu
Journal:  Neuroimage Clin       Date:  2013-03-15       Impact factor: 4.881

9.  Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions.

Authors:  Elizabeth M Sweeney; Russell T Shinohara; Blake E Dewey; Matthew K Schindler; John Muschelli; Daniel S Reich; Ciprian M Crainiceanu; Ani Eloyan
Journal:  Neuroimage Clin       Date:  2015-11-11       Impact factor: 4.881

10.  Metrics for evaluating 3D medical image segmentation: analysis, selection, and tool.

Authors:  Abdel Aziz Taha; Allan Hanbury
Journal:  BMC Med Imaging       Date:  2015-08-12       Impact factor: 1.930

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  2 in total

1.  Automated Integration of Multimodal MRI for the Probabilistic Detection of the Central Vein Sign in White Matter Lesions.

Authors:  J D Dworkin; P Sati; A Solomon; D L Pham; R Watts; M L Martin; D Ontaneda; M K Schindler; D S Reich; R T Shinohara
Journal:  AJNR Am J Neuroradiol       Date:  2018-09-13       Impact factor: 3.825

2.  Sensitivity of portable low-field magnetic resonance imaging for multiple sclerosis lesions.

Authors:  T Campbell Arnold; Danni Tu; Serhat V Okar; Govind Nair; Samantha By; Karan D Kawatra; Timothy E Robert-Fitzgerald; Lisa M Desiderio; Matthew K Schindler; Russell T Shinohara; Daniel S Reich; Joel M Stein
Journal:  Neuroimage Clin       Date:  2022-06-27       Impact factor: 4.891

  2 in total

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