Literature DB >> 25607174

Parallel ptychographic reconstruction.

Youssef S G Nashed, David J Vine, Tom Peterka, Junjing Deng, Rob Ross, Chris Jacobsen.   

Abstract

Ptychography is an imaging method whereby a coherent beam is scanned across an object, and an image is obtained by iterative phasing of the set of diffraction patterns. It is able to be used to image extended objects at a resolution limited by scattering strength of the object and detector geometry, rather than at an optics-imposed limit. As technical advances allow larger fields to be imaged, computational challenges arise for reconstructing the correspondingly larger data volumes, yet at the same time there is also a need to deliver reconstructed images immediately so that one can evaluate the next steps to take in an experiment. Here we present a parallel method for real-time ptychographic phase retrieval. It uses a hybrid parallel strategy to divide the computation between multiple graphics processing units (GPUs) and then employs novel techniques to merge sub-datasets into a single complex phase and amplitude image. Results are shown on a simulated specimen and a real dataset from an X-ray experiment conducted at a synchrotron light source.

Mesh:

Year:  2014        PMID: 25607174      PMCID: PMC4317139          DOI: 10.1364/OE.22.032082

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  28 in total

1.  Movable aperture lensless transmission microscopy: a novel phase retrieval algorithm.

Authors:  H M L Faulkner; J M Rodenburg
Journal:  Phys Rev Lett       Date:  2004-07-09       Impact factor: 9.161

2.  Ptychographic X-ray computed tomography at the nanoscale.

Authors:  Martin Dierolf; Andreas Menzel; Pierre Thibault; Philipp Schneider; Cameron M Kewish; Roger Wepf; Oliver Bunk; Franz Pfeiffer
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

3.  Hard-x-ray lensless imaging of extended objects.

Authors:  J M Rodenburg; A C Hurst; A G Cullis; B R Dobson; F Pfeiffer; O Bunk; C David; K Jefimovs; I Johnson
Journal:  Phys Rev Lett       Date:  2007-01-18       Impact factor: 9.161

4.  Quantitative phase contrast optimised cancerous cell differentiation via ptychography.

Authors:  Daniel Claus; Andrew M Maiden; Fucai Zhang; Francis G R Sweeney; Martin J Humphry; Hermann Schluesener; John M Rodenburg
Journal:  Opt Express       Date:  2012-04-23       Impact factor: 3.894

5.  Efficient subpixel image registration algorithms.

Authors:  Manuel Guizar-Sicairos; Samuel T Thurman; James R Fienup
Journal:  Opt Lett       Date:  2008-01-15       Impact factor: 3.776

6.  Probe retrieval in ptychographic coherent diffractive imaging.

Authors:  Pierre Thibault; Martin Dierolf; Oliver Bunk; Andreas Menzel; Franz Pfeiffer
Journal:  Ultramicroscopy       Date:  2009-01-04       Impact factor: 2.689

7.  High-resolution scanning x-ray diffraction microscopy.

Authors:  Pierre Thibault; Martin Dierolf; Andreas Menzel; Oliver Bunk; Christian David; Franz Pfeiffer
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

8.  Reconstructing state mixtures from diffraction measurements.

Authors:  Pierre Thibault; Andreas Menzel
Journal:  Nature       Date:  2013-02-07       Impact factor: 49.962

9.  Optimization of overlap uniformness for ptychography.

Authors:  Xiaojing Huang; Hanfei Yan; Ross Harder; Yeukuang Hwu; Ian K Robinson; Yong S Chu
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

10.  The correlation averaging of a regularly arranged bacterial cell envelope protein.

Authors:  W O Saxton; W Baumeister
Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

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  18 in total

1.  3D X-Ray Imaging of Continuous Objects beyond the Depth of Focus Limit.

Authors:  M A Gilles; Y S G Nashed; M DU; C Jacobsen; S M Wild
Journal:  Optica       Date:  2018-09-20       Impact factor: 11.104

2.  Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae.

Authors:  Junjing Deng; David J Vine; Si Chen; Youssef S G Nashed; Qiaoling Jin; Nicholas W Phillips; Tom Peterka; Rob Ross; Stefan Vogt; Chris J Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

3.  Continuous motion scan ptychography: characterization for increased speed in coherent x-ray imaging.

Authors:  Junjing Deng; Youssef S G Nashed; Si Chen; Nicholas W Phillips; Tom Peterka; Rob Ross; Stefan Vogt; Chris Jacobsen; David J Vine
Journal:  Opt Express       Date:  2015-03-09       Impact factor: 3.894

4.  Using automatic differentiation as a general framework for ptychographic reconstruction.

Authors:  Saugat Kandel; S Maddali; Marc Allain; Stephan O Hruszkewycz; Chris Jacobsen; Youssef S G Nashed
Journal:  Opt Express       Date:  2019-06-24       Impact factor: 3.894

5.  Nanoscale x-ray imaging of circuit features without wafer etching.

Authors:  Junjing Deng; Young Pyo Hong; Si Chen; Youssef S G Nashed; Tom Peterka; Anthony J F Levi; John Damoulakis; Sayan Saha; Travis Eiles; Chris Jacobsen
Journal:  Phys Rev B       Date:  2017-03-24       Impact factor: 4.036

6.  Opportunities and limitations for combined fly-scan ptychography and fluorescence microscopy.

Authors:  Junjing Deng; David J Vine; Si Chen; Youssef S G Nashed; Tom Peterka; Rob Ross; Stefan Vogt; Chris Jacobsen
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-09-18

7.  Advances and challenges in cryo ptychography at the Advanced Photon Source.

Authors:  J Deng; D J Vine; S Chen; Y S G Nashed; Q Jin; T Peterka; S Vogt; C Jacobsen
Journal:  AIP Conf Proc       Date:  2016

8.  Adorym: a multi-platform generic X-ray image reconstruction framework based on automatic differentiation.

Authors:  Ming Du; Saugat Kandel; Junjing Deng; Xiaojing Huang; Arnaud Demortiere; Tuan Tu Nguyen; Remi Tucoulou; Vincent De Andrade; Qiaoling Jin; Chris Jacobsen
Journal:  Opt Express       Date:  2021-03-29       Impact factor: 3.894

9.  Strategies for high-throughput focused-beam ptychography.

Authors:  Chris Jacobsen; Junjing Deng; Youssef Nashed
Journal:  J Synchrotron Radiat       Date:  2017-08-08       Impact factor: 2.616

10.  X-ray ptychographic and fluorescence microscopy of frozen-hydrated cells using continuous scanning.

Authors:  Junjing Deng; David J Vine; Si Chen; Qiaoling Jin; Youssef S G Nashed; Tom Peterka; Stefan Vogt; Chris Jacobsen
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

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