Literature DB >> 25605725

Mechanism of N-Acylthiourea-mediated activation of human histone deacetylase 8 (HDAC8) at molecular and cellular levels.

Raushan K Singh1, Kyongshin Cho2, Satish K R Padi3, Junru Yu1, Manas Haldar3, Tanmay Mandal1, Changhui Yan4, Gregory Cook1, Bin Guo3, Sanku Mallik3, D K Srivastava5.   

Abstract

We reported previously that an N-acylthiourea derivative (TM-2-51) serves as a potent and isozyme-selective activator for human histone deacetylase 8 (HDAC8). To probe the molecular mechanism of the enzyme activation, we performed a detailed account of the steady-state kinetics, thermodynamics, molecular modeling, and cell biology studies. The steady-state kinetic data revealed that TM-2-51 binds to HDAC8 at two sites in a positive cooperative manner. Isothermal titration calorimetric and molecular modeling data conformed to the two-site binding model of the enzyme-activator complex. We evaluated the efficacy of TM-2-51 on SH-SY5Y and BE(2)-C neuroblastoma cells, wherein the HDAC8 expression has been correlated with cellular malignancy. Whereas TM-2-51 selectively induced cell growth inhibition and apoptosis in SH-SY5Y cells, it showed no such effects in BE(2)-C cells, and this discriminatory feature appears to be encoded in the p53 genotype of the above cells. Our mechanistic and cellular studies on HDAC8 activation have the potential to provide insight into the development of novel anticancer drugs.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Calorimetry; Catalysis; Histone Deacetylase (HDAC); Neuroblastoma; p53

Mesh:

Substances:

Year:  2015        PMID: 25605725      PMCID: PMC4358293          DOI: 10.1074/jbc.M114.600627

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  p53 binding to nucleosomes within the p21 promoter in vivo leads to nucleosome loss and transcriptional activation.

Authors:  Oleg Laptenko; Rachel Beckerman; Ella Freulich; Carol Prives
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

2.  Histone deacetylase activators: N-acetylthioureas serve as highly potent and isozyme selective activators for human histone deacetylase-8 on a fluorescent substrate.

Authors:  Raushan K Singh; Tanmay Mandal; Narayanaganesh Balsubramanian; Tajae Viaene; Travis Leedahl; Nitesh Sule; Gregory Cook; D K Srivastava
Journal:  Bioorg Med Chem Lett       Date:  2011-08-04       Impact factor: 2.823

3.  Coumarin-suberoylanilide hydroxamic acid as a fluorescent probe for determining binding affinities and off-rates of histone deacetylase inhibitors.

Authors:  Raushan K Singh; Tanmay Mandal; Narayanaganesh Balasubramanian; Gregory Cook; D K Srivastava
Journal:  Anal Biochem       Date:  2010-09-22       Impact factor: 3.365

4.  Cloning and functional characterization of HDAC11, a novel member of the human histone deacetylase family.

Authors:  Lin Gao; Maria A Cueto; Fred Asselbergs; Peter Atadja
Journal:  J Biol Chem       Date:  2002-04-10       Impact factor: 5.157

5.  Mechanism of human SIRT1 activation by resveratrol.

Authors:  Margie T Borra; Brian C Smith; John M Denu
Journal:  J Biol Chem       Date:  2005-03-04       Impact factor: 5.157

6.  Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.

Authors:  John R Somoza; Robert J Skene; Bradley A Katz; Clifford Mol; Joseph D Ho; Andy J Jennings; Christine Luong; Andrew Arvai; Joseph J Buggy; Ellen Chi; Jie Tang; Bi-Ching Sang; Erik Verner; Robert Wynands; Ellen M Leahy; Douglas R Dougan; Gyorgy Snell; Marc Navre; Mark W Knuth; Ronald V Swanson; Duncan E McRee; Leslie W Tari
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

7.  Evidence for a common mechanism of SIRT1 regulation by allosteric activators.

Authors:  Basil P Hubbard; Ana P Gomes; Han Dai; Jun Li; April W Case; Thomas Considine; Thomas V Riera; Jessica E Lee; Sook Yen E; Dudley W Lamming; Bradley L Pentelute; Eli R Schuman; Linda A Stevens; Alvin J Y Ling; Sean M Armour; Shaday Michan; Huizhen Zhao; Yong Jiang; Sharon M Sweitzer; Charles A Blum; Jeremy S Disch; Pui Yee Ng; Konrad T Howitz; Anabela P Rolo; Yoshitomo Hamuro; Joel Moss; Robert B Perni; James L Ellis; George P Vlasuk; David A Sinclair
Journal:  Science       Date:  2013-03-08       Impact factor: 47.728

8.  Mapping the surface of Escherichia coli peptide deformylase by NMR with organic solvents.

Authors:  Douglas W Byerly; Craig A McElroy; Mark P Foster
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

9.  Combining mass spectrometry and peptide arrays to profile the specificities of histone deacetylases.

Authors:  Zachary A Gurard-Levin; Joohoon Kim; Milan Mrksich
Journal:  Chembiochem       Date:  2009-09-04       Impact factor: 3.164

10.  HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.

Authors:  Matthew A Deardorff; Masashige Bando; Ryuichiro Nakato; Erwan Watrin; Takehiko Itoh; Masashi Minamino; Katsuya Saitoh; Makiko Komata; Yuki Katou; Dinah Clark; Kathryn E Cole; Elfride De Baere; Christophe Decroos; Nataliya Di Donato; Sarah Ernst; Lauren J Francey; Yolanda Gyftodimou; Kyotaro Hirashima; Melanie Hullings; Yuuichi Ishikawa; Christian Jaulin; Maninder Kaur; Tohru Kiyono; Patrick M Lombardi; Laura Magnaghi-Jaulin; Geert R Mortier; Naohito Nozaki; Michael B Petersen; Hiroyuki Seimiya; Victoria M Siu; Yutaka Suzuki; Kentaro Takagaki; Jonathan J Wilde; Patrick J Willems; Claude Prigent; Gabriele Gillessen-Kaesbach; David W Christianson; Frank J Kaiser; Laird G Jackson; Toru Hirota; Ian D Krantz; Katsuhiko Shirahige
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

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  10 in total

1.  Real-time monitoring of conformational transitions of single-molecule histone deacetylase 8 with nanocircuits.

Authors:  Seungyong You; James Froberg; Junru Yu; Manas Haldar; Abbas Sedigh; Sanku Mallik; D K Srivastava; Yongki Choi
Journal:  Chem Commun (Camb)       Date:  2017-03-16       Impact factor: 6.222

Review 2.  Structural aspects of HDAC8 mechanism and dysfunction in Cornelia de Lange syndrome spectrum disorders.

Authors:  Matthew A Deardorff; Nicholas J Porter; David W Christianson
Journal:  Protein Sci       Date:  2016-09-16       Impact factor: 6.725

3.  An in silico mechanistic insight into HDAC8 activation facilitates the discovery of new small-molecule activators.

Authors:  Jintong Du; Wen Li; Bo Liu; Yingkai Zhang; Jinming Yu; Xuben Hou; Hao Fang
Journal:  Bioorg Med Chem       Date:  2020-06-30       Impact factor: 3.641

4.  Biochemical and structural characterization of HDAC8 mutants associated with Cornelia de Lange syndrome spectrum disorders.

Authors:  Christophe Decroos; Nicolas H Christianson; Laura E Gullett; Christine M Bowman; Karen E Christianson; Matthew A Deardorff; David W Christianson
Journal:  Biochemistry       Date:  2015-10-14       Impact factor: 3.162

5.  Valproic acid inhibits glioblastoma multiforme cell growth via paraoxonase 2 expression.

Authors:  Jen-Ho Tseng; Cheng-Yi Chen; Pei-Chun Chen; Sheng-Huang Hsiao; Chi-Chen Fan; Yu-Chih Liang; Chie-Pein Chen
Journal:  Oncotarget       Date:  2017-02-28

6.  Histone deacetylase 8 protects human proximal tubular epithelial cells from hypoxia-mimetic cobalt- and hypoxia/reoxygenation-induced mitochondrial fission and cytotoxicity.

Authors:  Soon-Duck Ha; Ori Solomon; Masoud Akbari; Alp Sener; Sung Ouk Kim
Journal:  Sci Rep       Date:  2018-07-27       Impact factor: 4.379

Review 7.  Pathological Role of HDAC8: Cancer and Beyond.

Authors:  Ji Yoon Kim; Hayoung Cho; Jung Yoo; Go Woon Kim; Yu Hyun Jeon; Sang Wu Lee; So Hee Kwon
Journal:  Cells       Date:  2022-10-09       Impact factor: 7.666

8.  Role of the Substrate Specificity-Defining Residues of Human SIRT5 in Modulating the Structural Stability and Inhibitory Features of the Enzyme.

Authors:  Junru Yu; Manas Haldar; Sanku Mallik; D K Srivastava
Journal:  PLoS One       Date:  2016-03-29       Impact factor: 3.240

9.  KDAC8 with High Basal Velocity Is Not Activated by N-Acetylthioureas.

Authors:  Tasha B Toro; Subramanya Pingali; Thao P Nguyen; Destane S Garrett; Kyra A Dodson; Kyara A Nichols; Rashad A Haynes; Florastina Payton-Stewart; Terry J Watt
Journal:  PLoS One       Date:  2016-01-08       Impact factor: 3.240

Review 10.  Epigenetic assays for chemical biology and drug discovery.

Authors:  Sheraz Gul
Journal:  Clin Epigenetics       Date:  2017-04-21       Impact factor: 6.551

  10 in total

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