Literature DB >> 19688789

Combining mass spectrometry and peptide arrays to profile the specificities of histone deacetylases.

Zachary A Gurard-Levin1, Joohoon Kim, Milan Mrksich.   

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Year:  2009        PMID： 19688789      PMCID： PMC2813191          DOI： 10.1002/cbic.200900417

Source DB:  PubMed          Journal:  Chembiochem        ISSN： 1439-4227            Impact factor:   3.164


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  16 in total

1.  A non-isotopic assay for histone deacetylase activity.

Authors:  K Hoffmann; G Brosch; P Loidl; M Jung
Journal:  Nucleic Acids Res       Date:  1999-05-01       Impact factor: 16.971

Review 2.  Label-free screening of bio-molecular interactions.

Authors:  Matthew A Cooper
Journal:  Anal Bioanal Chem       Date:  2003-08-07       Impact factor: 4.142

3.  Toward selective histone deacetylase inhibitor design: homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases.

Authors:  Di-Fei Wang; Paul Helquist; Norbert L Wiech; Olaf Wiest
Journal:  J Med Chem       Date:  2005-11-03       Impact factor: 7.446

4.  The SMRT and N-CoR corepressors are activating cofactors for histone deacetylase 3.

Authors:  M G Guenther; O Barak; M A Lazar
Journal:  Mol Cell Biol       Date:  2001-09       Impact factor: 4.272

5.  Mechanism of human SIRT1 activation by resveratrol.

Authors:  Margie T Borra; Brian C Smith; John M Denu
Journal:  J Biol Chem       Date:  2005-03-04       Impact factor: 5.157

6.  A method for connecting solution-phase enzyme activity assays with immobilized format analysis by mass spectrometry.

Authors:  Dal-Hee Min; Woon-Seok Yeo; Milan Mrksich
Journal:  Anal Chem       Date:  2004-07-15       Impact factor: 6.986

7.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

8.  Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-acetyl ADP ribose and histone peptide.

Authors:  Kehao Zhao; Xiaomei Chai; Ronen Marmorstein
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

Review 9.  Mass spectrometry of self-assembled monolayers: a new tool for molecular surface science.

Authors:  Milan Mrksich
Journal:  ACS Nano       Date:  2008-01       Impact factor: 15.881

10.  The activity of HDAC8 depends on local and distal sequences of its peptide substrates.

Authors:  Zachary A Gurard-Levin; Milan Mrksich
Journal:  Biochemistry       Date:  2008-05-10       Impact factor: 3.162
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  31 in total

1.  Non-peptide macrocyclic histone deacetylase inhibitors derived from tricyclic ketolide skeleton.

Authors:  Sandra C Mwakwari; William Guerrant; Vishal Patil; Shabana I Khan; Babu L Tekwani; Zachary A Gurard-Levin; Milan Mrksich; Adegboyega K Oyelere
Journal:  J Med Chem       Date:  2010-08-26       Impact factor: 7.446

2.  KDAC8 substrate specificity quantified by a biologically relevant, label-free deacetylation assay.

Authors:  Tasha B Toro; Terry J Watt
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

3.  Profiling Protein Tyrosine Phosphatase Specificity with Self-Assembled Monolayers for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry and Peptide Arrays.

Authors:  Che-Fan Huang; Milan Mrksich
Journal:  ACS Comb Sci       Date:  2019-10-24       Impact factor: 3.784

Review 4.  Deciphering enzyme function using peptide arrays.

Authors:  Alexandra Thiele; Gabriele I Stangl; Mike Schutkowski
Journal:  Mol Biotechnol       Date:  2011-11       Impact factor: 2.695

Review 5.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

6.  Label-Free Assay of Protein Tyrosine Phosphatase Activity in Single Cells.

Authors:  Elamar Hakim Moully; Eric J Berns; Milan Mrksich
Journal:  Anal Chem       Date:  2019-09-26       Impact factor: 6.986

7.  SIRT1 is a critical regulator of K562 cell growth, survival, and differentiation.

Authors:  Mark T Duncan; Teresa A DeLuca; Hsin-Yu Kuo; Minchang Yi; Milan Mrksich; William M Miller
Journal:  Exp Cell Res       Date:  2016-04-13       Impact factor: 3.905

8.  Purification of metal-dependent lysine deacetylases with consistently high activity.

Authors:  Tasha B Toro; Richard G Painter; Rashad A Haynes; Elena Y Glotser; Melyssa R Bratton; Jenae R Bryant; Kyara A Nichols; Asia N Matthew-Onabanjo; Ashley N Matthew; Derek R Bratcher; Chanel D Perry; Terry J Watt
Journal:  Protein Expr Purif       Date:  2017-08-24       Impact factor: 1.650

9.  HDAC8 substrate selectivity is determined by long- and short-range interactions leading to enhanced reactivity for full-length histone substrates compared with peptides.

Authors:  Carol Ann Castañeda; Noah A Wolfson; Katherine R Leng; Yin-Ming Kuo; Andrew J Andrews; Carol A Fierke
Journal:  J Biol Chem       Date:  2017-11-06       Impact factor: 5.157

10.  Peptide arrays identify isoform-selective substrates for profiling endogenous lysine deacetylase activity.

Authors:  Zachary A Gurard-Levin; Kristopher A Kilian; Joohoon Kim; Katinka Bähr; Milan Mrksich
Journal:  ACS Chem Biol       Date:  2010-09-17       Impact factor: 5.100
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