Literature DB >> 27576763

Structural aspects of HDAC8 mechanism and dysfunction in Cornelia de Lange syndrome spectrum disorders.

Matthew A Deardorff1,2, Nicholas J Porter3, David W Christianson4.   

Abstract

Cornelia de Lange Syndrome (CdLS) encompasses a broad spectrum of phenotypes characterized by distinctive craniofacial abnormalities, limb malformations, growth retardation, and intellectual disability. CdLS spectrum disorders are referred to as cohesinopathies, with ∼70% of patients having a mutation in a gene encoding a core cohesin protein (SMC1A, SMC3, or RAD21) or a cohesin regulatory protein (NIPBL or HDAC8). Notably, the regulatory function of HDAC8 in cohesin biology has only recently been discovered. This Zn2+ -dependent hydrolase catalyzes the deacetylation of SMC3, a necessary step for cohesin recycling during the cell cycle. To date, 23 different missense mutants in the gene encoding HDAC8 have been identified in children with developmental features that overlap those of CdLS. Enzymological, biophysical, and structural studies of CdLS HDAC8 protein mutants have yielded critical insight on compromised catalysis in vitro. Most CdLS HDAC8 mutations trigger structural changes that directly or indirectly impact substrate binding and catalysis. Additionally, several mutations significantly compromise protein thermostability. Intriguingly, catalytic activity in many HDAC8 mutants can be partially or fully restored by an N-acylthiourea activator, suggesting a plausible strategy for the chemical rescue of compromised HDAC8 catalysis in vivo.
© 2016 The Protein Society.

Entities:  

Keywords:  birth defect; human genetics; lysine deacetylase; protein crystallography; zinc enzyme

Mesh:

Substances:

Year:  2016        PMID: 27576763      PMCID: PMC5079251          DOI: 10.1002/pro.3030

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  52 in total

1.  Chromosomal cohesin forms a ring.

Authors:  Stephan Gruber; Christian H Haering; Kim Nasmyth
Journal:  Cell       Date:  2003-03-21       Impact factor: 41.582

Review 2.  The regulation of sister chromatid cohesion.

Authors:  Ana Losada
Journal:  Biochim Biophys Acta       Date:  2008-04-24

3.  Histone deacetylase activators: N-acetylthioureas serve as highly potent and isozyme selective activators for human histone deacetylase-8 on a fluorescent substrate.

Authors:  Raushan K Singh; Tanmay Mandal; Narayanaganesh Balsubramanian; Tajae Viaene; Travis Leedahl; Nitesh Sule; Gregory Cook; D K Srivastava
Journal:  Bioorg Med Chem Lett       Date:  2011-08-04       Impact factor: 2.823

4.  Variable active site loop conformations accommodate the binding of macrocyclic largazole analogues to HDAC8.

Authors:  Christophe Decroos; Dane J Clausen; Brandon E Haines; Olaf Wiest; Robert M Williams; David W Christianson
Journal:  Biochemistry       Date:  2015-03-20       Impact factor: 3.162

5.  Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.

Authors:  John R Somoza; Robert J Skene; Bradley A Katz; Clifford Mol; Joseph D Ho; Andy J Jennings; Christine Luong; Andrew Arvai; Joseph J Buggy; Ellen Chi; Jie Tang; Bi-Ching Sang; Erik Verner; Robert Wynands; Ellen M Leahy; Douglas R Dougan; Gyorgy Snell; Marc Navre; Mark W Knuth; Ronald V Swanson; Duncan E McRee; Leslie W Tari
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

6.  Descriptive epidemiology of Cornelia de Lange syndrome in Europe.

Authors:  Ingeborg Barisic; Visnja Tokic; Maria Loane; Fabrizio Bianchi; Eliza Calzolari; Ester Garne; Diana Wellesley; Helen Dolk
Journal:  Am J Med Genet A       Date:  2008-01-01       Impact factor: 2.802

7.  Exome sequencing identifies a de novo mutation in HDAC8 associated with Cornelia de Lange syndrome.

Authors:  Lei Feng; Daizhan Zhou; Zhou Zhang; Yun Liu; Yabo Yang
Journal:  J Hum Genet       Date:  2014-08-07       Impact factor: 3.172

Review 8.  On the molecular etiology of Cornelia de Lange syndrome.

Authors:  Dale Dorsett; Ian D Krantz
Journal:  Ann N Y Acad Sci       Date:  2009-01       Impact factor: 5.691

9.  An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion.

Authors:  Frederic Beckouët; Bin Hu; Maurici B Roig; Takashi Sutani; Makiko Komata; Pelin Uluocak; Vittorio L Katis; Katsuhiko Shirahige; Kim Nasmyth
Journal:  Mol Cell       Date:  2010-09-10       Impact factor: 17.970

10.  HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.

Authors:  Matthew A Deardorff; Masashige Bando; Ryuichiro Nakato; Erwan Watrin; Takehiko Itoh; Masashi Minamino; Katsuya Saitoh; Makiko Komata; Yuki Katou; Dinah Clark; Kathryn E Cole; Elfride De Baere; Christophe Decroos; Nataliya Di Donato; Sarah Ernst; Lauren J Francey; Yolanda Gyftodimou; Kyotaro Hirashima; Melanie Hullings; Yuuichi Ishikawa; Christian Jaulin; Maninder Kaur; Tohru Kiyono; Patrick M Lombardi; Laura Magnaghi-Jaulin; Geert R Mortier; Naohito Nozaki; Michael B Petersen; Hiroyuki Seimiya; Victoria M Siu; Yutaka Suzuki; Kentaro Takagaki; Jonathan J Wilde; Patrick J Willems; Claude Prigent; Gabriele Gillessen-Kaesbach; David W Christianson; Frank J Kaiser; Laird G Jackson; Toru Hirota; Ian D Krantz; Katsuhiko Shirahige
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

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  11 in total

Review 1.  Regulation of Central Nervous System Development by Class I Histone Deacetylases.

Authors:  Santosh R D'Mello
Journal:  Dev Neurosci       Date:  2020-01-24       Impact factor: 2.984

2.  Preparation of a new construct of human histone deacetylase 8 for the crystallization of enzyme-inhibitor complexes.

Authors:  Nicholas J Porter; David W Christianson
Journal:  Methods Enzymol       Date:  2019-07-18       Impact factor: 1.600

3.  Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8.

Authors:  Nicholas J Porter; Nicolas H Christianson; Christophe Decroos; David W Christianson
Journal:  Biochemistry       Date:  2016-11-28       Impact factor: 3.162

4.  Structural analysis of histone deacetylase 8 mutants associated with Cornelia de Lange Syndrome spectrum disorders.

Authors:  Jeremy D Osko; Nicholas J Porter; Christophe Decroos; Matthew S Lee; Paris R Watson; Sarah E Raible; Ian D Krantz; Matthew A Deardorff; David W Christianson
Journal:  J Struct Biol       Date:  2020-12-11       Impact factor: 2.867

Review 5.  X-Linked Sensorineural Hearing Loss: A Literature Review.

Authors:  Virginia Corvino; Pasqualina Apisa; Rita Malesci; Carla Laria; Gennaro Auletta; Annamaria Franzé
Journal:  Curr Genomics       Date:  2018-08       Impact factor: 2.236

Review 6.  Understanding Failure and Improving Treatment Using HDAC Inhibitors for Prostate Cancer.

Authors:  Zohaib Rana; Sarah Diermeier; Muhammad Hanif; Rhonda J Rosengren
Journal:  Biomedicines       Date:  2020-01-30

Review 7.  A Broader Perspective on the Prenatal Diagnosis of Cornelia de Lange Syndrome: Review of the Literature and Case Presentation.

Authors:  Anca Maria Panaitescu; Simona Duta; Nicolae Gica; Radu Botezatu; Florina Nedelea; Gheorghe Peltecu; Alina Veduta
Journal:  Diagnostics (Basel)       Date:  2021-01-19

Review 8.  Hereditary Hearing Impairment with Cutaneous Abnormalities.

Authors:  Tung-Lin Lee; Pei-Hsuan Lin; Pei-Lung Chen; Jin-Bon Hong; Chen-Chi Wu
Journal:  Genes (Basel)       Date:  2020-12-30       Impact factor: 4.096

Review 9.  The emerging role of chromatin remodelers in neurodevelopmental disorders: a developmental perspective.

Authors:  Britt Mossink; Moritz Negwer; Dirk Schubert; Nael Nadif Kasri
Journal:  Cell Mol Life Sci       Date:  2020-12-02       Impact factor: 9.261

10.  Aromatic side-chain flips orchestrate the conformational sampling of functional loops in human histone deacetylase 8.

Authors:  Vaibhav Kumar Shukla; Lucas Siemons; Francesco L Gervasio; D Flemming Hansen
Journal:  Chem Sci       Date:  2021-05-27       Impact factor: 9.825

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