Literature DB >> 25565029

From guide to target: molecular insights into eukaryotic RNA-interference machinery.

Jonathan J Ipsaro1, Leemor Joshua-Tor1.   

Abstract

Since its relatively recent discovery, RNA interference (RNAi) has emerged as a potent, specific and ubiquitous means of gene regulation. Through a number of pathways that are conserved in eukaryotes from yeast to humans, small noncoding RNAs direct molecular machinery to silence gene expression. In this Review, we focus on mechanisms and structures that govern RNA silencing in higher organisms. In addition to highlighting recent advances, we discuss parallels and differences among RNAi pathways. Together, the studies reviewed herein reveal the versatility and programmability of RNA-induced silencing complexes and emphasize the importance of both upstream biogenesis and downstream silencing factors.

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Year:  2015        PMID: 25565029      PMCID: PMC4450863          DOI: 10.1038/nsmb.2931

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  131 in total

Review 1.  New and old roles of the double-stranded RNA-binding domain.

Authors:  Michael Doyle; Michael F Jantsch
Journal:  J Struct Biol       Date:  2002 Oct-Dec       Impact factor: 2.867

2.  miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.

Authors:  Marc R Fabian; Maja K Cieplak; Filipp Frank; Masahiro Morita; Jonathan Green; Tharan Srikumar; Bhushan Nagar; Tadashi Yamamoto; Brian Raught; Thomas F Duchaine; Nahum Sonenberg
Journal:  Nat Struct Mol Biol       Date:  2011-10-07       Impact factor: 15.369

3.  Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage.

Authors:  Zhihua Du; John K Lee; Richard Tjhen; Robert M Stroud; Thomas L James
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

4.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

5.  Molecular dissection of human Argonaute proteins by DNA shuffling.

Authors:  Nina Schürmann; Leonardo G Trabuco; Christian Bender; Robert B Russell; Dirk Grimm
Journal:  Nat Struct Mol Biol       Date:  2013-06-09       Impact factor: 15.369

6.  Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells.

Authors:  Julien Béthune; Caroline G Artus-Revel; Witold Filipowicz
Journal:  EMBO Rep       Date:  2012-06-08       Impact factor: 8.807

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  Structure of yeast Argonaute with guide RNA.

Authors:  Kotaro Nakanishi; David E Weinberg; David P Bartel; Dinshaw J Patel
Journal:  Nature       Date:  2012-06-20       Impact factor: 49.962

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  84 in total

1.  Sorting Out Identities: An Educational Primer for Use with "Novel Tools for Genetic Manipulation of Follicle Stem Cells in the Drosophila Ovary Reveal an Integrin-Dependent Transition from Quiescence to Proliferation".

Authors:  Diane Silva; Jennifer C Jemc
Journal:  Genetics       Date:  2015-09       Impact factor: 4.562

Review 2.  Roles of microRNAs as non-invasive biomarker and therapeutic target in colorectal cancer.

Authors:  Timothy Ming-Hun Wan; Deepak Narayanan Iyer; Lui Ng
Journal:  Histol Histopathol       Date:  2019-10-16       Impact factor: 2.303

Review 3.  Towards a molecular understanding of microRNA-mediated gene silencing.

Authors:  Stefanie Jonas; Elisa Izaurralde
Journal:  Nat Rev Genet       Date:  2015-06-16       Impact factor: 53.242

Review 4.  miRNA signatures in childhood sarcomas and their clinical implications.

Authors:  G M Viera; K B Salomao; G R de Sousa; M Baroni; L E A Delsin; J A Pezuk; M S Brassesco
Journal:  Clin Transl Oncol       Date:  2019-04-04       Impact factor: 3.405

5.  Guide Strand 3'-End Modifications Regulate siRNA Specificity.

Authors:  Rachel A P Valenzuela; Kazumitsu Onizuka; Alexi A Ball-Jones; Tiannan Hu; Scott R Suter; Peter A Beal
Journal:  Chembiochem       Date:  2016-11-07       Impact factor: 3.164

6.  Tracing insights into human metabolism using chemical engineering approaches.

Authors:  Thekla Cordes; Christian M Metallo
Journal:  Curr Opin Chem Eng       Date:  2016-09-10       Impact factor: 5.163

Review 7.  A Macro View of MicroRNAs: The Discovery of MicroRNAs and Their Role in Hematopoiesis and Hematologic Disease.

Authors:  Cary N Weiss; Keisuke Ito
Journal:  Int Rev Cell Mol Biol       Date:  2017-04-21       Impact factor: 6.813

8.  Stable and Inducible Gene Knockdown in Primary Human Fibroblasts: A Versatile Tool to Study the Role of Human Cytomegalovirus Host Cell Factors.

Authors:  Anne-Charlotte Stilp; Patrick König; Myriam Scherer; Thomas Stamminger
Journal:  Methods Mol Biol       Date:  2021

9.  Flavivirus sfRNA suppresses antiviral RNA interference in cultured cells and mosquitoes and directly interacts with the RNAi machinery.

Authors:  Stephanie L Moon; Benjamin J T Dodd; Doug E Brackney; Carol J Wilusz; Gregory D Ebel; Jeffrey Wilusz
Journal:  Virology       Date:  2015-08-29       Impact factor: 3.616

10.  Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.

Authors:  Yiwei Liu; Daria Esyunina; Ivan Olovnikov; Marianna Teplova; Andrey Kulbachinskiy; Alexei A Aravin; Dinshaw J Patel
Journal:  Cell Rep       Date:  2018-07-10       Impact factor: 9.423

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