Literature DB >> 28480159

Tracing insights into human metabolism using chemical engineering approaches.

Thekla Cordes1, Christian M Metallo1,2.   

Abstract

Metabolism coordinates the conversion of available nutrients toward energy, biosynthetic intermediates, and signaling molecules to mediate virtually all biological functions. Dysregulation of metabolic pathways contributes to many diseases, so a detailed understanding of human metabolism has significant therapeutic implications. Over the last decade major technological advances in the areas of analytical chemistry, computational estimation of intracellular fluxes, and biological engineering have improved our ability to observe and engineer metabolic pathways. These approaches are reminiscent of the design, operation, and control of industrial chemical plants. Immune cells have emerged as an intriguing system in which metabolism influences diverse biological functions. Application of metabolic flux analysis and related approaches to macrophages and T cells offers great therapeutic opportunities to biochemical engineers.

Entities:  

Year:  2016        PMID: 28480159      PMCID: PMC5417699          DOI: 10.1016/j.coche.2016.08.019

Source DB:  PubMed          Journal:  Curr Opin Chem Eng        ISSN: 2211-3398            Impact factor:   5.163


  95 in total

1.  Limiting Cholesterol Biosynthetic Flux Spontaneously Engages Type I IFN Signaling.

Authors:  Autumn G York; Kevin J Williams; Joseph P Argus; Quan D Zhou; Gurpreet Brar; Laurent Vergnes; Elizabeth E Gray; Anjie Zhen; Nicholas C Wu; Douglas H Yamada; Cameron R Cunningham; Elizabeth J Tarling; Moses Q Wilks; David Casero; David H Gray; Amy K Yu; Eric S Wang; David G Brooks; Ren Sun; Scott G Kitchen; Ting-Ting Wu; Karen Reue; Daniel B Stetson; Steven J Bensinger
Journal:  Cell       Date:  2015-12-10       Impact factor: 41.582

Review 2.  Itaconic Acid: The Surprising Role of an Industrial Compound as a Mammalian Antimicrobial Metabolite.

Authors:  Thekla Cordes; Alessandro Michelucci; Karsten Hiller
Journal:  Annu Rev Nutr       Date:  2015-05-13       Impact factor: 11.848

3.  INCA: a computational platform for isotopically non-stationary metabolic flux analysis.

Authors:  Jamey D Young
Journal:  Bioinformatics       Date:  2014-01-11       Impact factor: 6.937

4.  High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells.

Authors:  Yuexin Zhou; Shiyou Zhu; Changzu Cai; Pengfei Yuan; Chunmei Li; Yanyi Huang; Wensheng Wei
Journal:  Nature       Date:  2014-04-09       Impact factor: 49.962

Review 5.  Emerging applications of metabolomics in drug discovery and precision medicine.

Authors:  David S Wishart
Journal:  Nat Rev Drug Discov       Date:  2016-03-11       Impact factor: 84.694

6.  In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy.

Authors:  Christopher E Nelson; Chady H Hakim; David G Ousterout; Pratiksha I Thakore; Eirik A Moreb; Ruth M Castellanos Rivera; Sarina Madhavan; Xiufang Pan; F Ann Ran; Winston X Yan; Aravind Asokan; Feng Zhang; Dongsheng Duan; Charles A Gersbach
Journal:  Science       Date:  2015-12-31       Impact factor: 47.728

Review 7.  Fatty acid analysis by high resolution gas chromatography and mass spectrometry for clinical and experimental applications.

Authors:  J Thomas Brenna
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2013-09       Impact factor: 4.294

8.  Itaconate Links Inhibition of Succinate Dehydrogenase with Macrophage Metabolic Remodeling and Regulation of Inflammation.

Authors:  Vicky Lampropoulou; Alexey Sergushichev; Monika Bambouskova; Sharmila Nair; Emma E Vincent; Ekaterina Loginicheva; Luisa Cervantes-Barragan; Xiucui Ma; Stanley Ching-Cheng Huang; Takla Griss; Carla J Weinheimer; Shabaana Khader; Gwendalyn J Randolph; Edward J Pearce; Russell G Jones; Abhinav Diwan; Michael S Diamond; Maxim N Artyomov
Journal:  Cell Metab       Date:  2016-06-30       Impact factor: 27.287

Review 9.  From guide to target: molecular insights into eukaryotic RNA-interference machinery.

Authors:  Jonathan J Ipsaro; Leemor Joshua-Tor
Journal:  Nat Struct Mol Biol       Date:  2015-01       Impact factor: 15.369

10.  Glutamine-driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia.

Authors:  Jing Fan; Jurre J Kamphorst; Robin Mathew; Michelle K Chung; Eileen White; Tomer Shlomi; Joshua D Rabinowitz
Journal:  Mol Syst Biol       Date:  2013-12-03       Impact factor: 11.429

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  2 in total

1.  Inhibition of nucleotide synthesis promotes replicative senescence of human mammary epithelial cells.

Authors:  Alireza Delfarah; Sydney Parrish; Jason A Junge; Jesse Yang; Frances Seo; Si Li; John Mac; Pin Wang; Scott E Fraser; Nicholas A Graham
Journal:  J Biol Chem       Date:  2019-05-28       Impact factor: 5.157

2.  Dynamic 13C Flux Analysis Captures the Reorganization of Adipocyte Glucose Metabolism in Response to Insulin.

Authors:  Lake-Ee Quek; James R Krycer; Satoshi Ohno; Katsuyuki Yugi; Daniel J Fazakerley; Richard Scalzo; Sarah D Elkington; Ziwei Dai; Akiyoshi Hirayama; Satsuki Ikeda; Futaba Shoji; Kumi Suzuki; Jason W Locasale; Tomoyoshi Soga; David E James; Shinya Kuroda
Journal:  iScience       Date:  2020-01-21
  2 in total

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