Literature DB >> 25561719

Histone variants and epigenetics.

Steven Henikoff1, M Mitchell Smith2.   

Abstract

Histones package and compact DNA by assembling into nucleosome core particles. Most histones are synthesized at S phase for rapid deposition behind replication forks. In addition, the replacement of histones deposited during S phase by variants that can be deposited independently of replication provide the most fundamental level of chromatin differentiation. Alternative mechanisms for depositing different variants can potentially establish and maintain epigenetic states. Variants have also evolved crucial roles in chromosome segregation, transcriptional regulation, DNA repair, and other processes. Investigations into the evolution, structure, and metabolism of histone variants provide a foundation for understanding the participation of chromatin in important cellular processes and in epigenetic memory.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2015        PMID: 25561719      PMCID: PMC4292162          DOI: 10.1101/cshperspect.a019364

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  169 in total

1.  H2AX is required for chromatin remodeling and inactivation of sex chromosomes in male mouse meiosis.

Authors:  Oscar Fernandez-Capetillo; Shantha K Mahadevaiah; Arkady Celeste; Peter J Romanienko; R Daniel Camerini-Otero; William M Bonner; Katia Manova; Paul Burgoyne; André Nussenzweig
Journal:  Dev Cell       Date:  2003-04       Impact factor: 12.270

Review 2.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

3.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

Review 4.  NuA4 and SWR1-C: two chromatin-modifying complexes with overlapping functions and components.

Authors:  Phoebe Y T Lu; Nancy Lévesque; Michael S Kobor
Journal:  Biochem Cell Biol       Date:  2009-10       Impact factor: 3.626

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Authors:  Menno P Creyghton; Styliani Markoulaki; Stuart S Levine; Jacob Hanna; Michael A Lodato; Ky Sha; Richard A Young; Rudolf Jaenisch; Laurie A Boyer
Journal:  Cell       Date:  2008-11-06       Impact factor: 41.582

7.  Histone H2A.Z is essential for estrogen receptor signaling.

Authors:  Nicolas Gévry; Sara Hardy; Pierre-Etienne Jacques; Liette Laflamme; Amy Svotelis; François Robert; Luc Gaudreau
Journal:  Genes Dev       Date:  2009-06-10       Impact factor: 11.361

8.  The XNP remodeler targets dynamic chromatin in Drosophila.

Authors:  Jonathan I Schneiderman; Akiko Sakai; Sara Goldstein; Kami Ahmad
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-11       Impact factor: 11.205

9.  H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization.

Authors:  Clemens Bönisch; Katrin Schneider; Sebastian Pünzeler; Sonja M Wiedemann; Christina Bielmeier; Marco Bocola; H Christian Eberl; Wolfgang Kuegel; Jürgen Neumann; Elisabeth Kremmer; Heinrich Leonhardt; Matthias Mann; Jens Michaelis; Lothar Schermelleh; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

10.  Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression.

Authors:  Sujun Hua; Caleb B Kallen; Ruby Dhar; Maria T Baquero; Christopher E Mason; Beth A Russell; Parantu K Shah; Jiang Liu; Andrey Khramtsov; Maria S Tretiakova; Thomas N Krausz; Olufunmilayo I Olopade; David L Rimm; Kevin P White
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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  117 in total

Review 1.  The role of epigenetics and chromatin structure in transcriptional regulation in malaria parasites.

Authors:  Steven Abel; Karine G Le Roch
Journal:  Brief Funct Genomics       Date:  2019-09-24       Impact factor: 4.241

Review 2.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 3.  Epigenetics of ciliates.

Authors:  Douglas L Chalker; Eric Meyer; Kazufumi Mochizuki
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

Review 4.  Dosage compensation in Drosophila.

Authors:  John C Lucchesi; Mitzi I Kuroda
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-05-01       Impact factor: 10.005

5.  Quantitative Mass Spectrometry Reveals Changes in Histone H2B Variants as Cells Undergo Inorganic Arsenic-Mediated Cellular Transformation.

Authors:  Matthew Rea; Tingting Jiang; Rebekah Eleazer; Meredith Eckstein; Alan G Marshall; Yvonne N Fondufe-Mittendorf
Journal:  Mol Cell Proteomics       Date:  2016-05-11       Impact factor: 5.911

Review 6.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 7.  Yin-yang actions of histone methylation regulatory complexes in the brain.

Authors:  Patricia Marie Garay; Margarete Aryanka Wallner; Shigeki Iwase
Journal:  Epigenomics       Date:  2016-11-18       Impact factor: 4.778

Review 8.  Genomic imprinting in mammals.

Authors:  Denise P Barlow; Marisa S Bartolomei
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-02-01       Impact factor: 10.005

Review 9.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

10.  Structural basis of H2A.Z recognition by SRCAP chromatin-remodeling subunit YL1.

Authors:  Xiaoping Liang; Shan Shan; Lu Pan; Jicheng Zhao; Anand Ranjan; Feng Wang; Zhuqiang Zhang; Yingzi Huang; Hanqiao Feng; Debbie Wei; Li Huang; Xuehui Liu; Qiang Zhong; Jizhong Lou; Guohong Li; Carl Wu; Zheng Zhou
Journal:  Nat Struct Mol Biol       Date:  2016-03-14       Impact factor: 15.369

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