Literature DB >> 25554730

RNA-binding proteins in pluripotency, differentiation, and reprogramming.

Diana Guallar1, Jianlong Wang2.   

Abstract

Embryonic stem cell maintenance, differentiation, and somatic cell reprogramming require the interplay of multiple pluripotency factors, epigenetic remodelers, and extracellular signaling pathways. RNA-binding proteins (RBPs) are involved in a wide range of regulatory pathways, from RNA metabolism to epigenetic modifications. In recent years we have witnessed more and more studies on the discovery of new RBPs and the assessment of their functions in a variety of biological systems, including stem cells. We review the current studies on RBPs and focus on those that have functional implications in pluripotency, differentiation, and/or reprogramming in both the human and mouse systems.

Entities:  

Keywords:  RNA-binding protein; differentiation; embryonic stem cell; lncRNA; pluripotency; somatic cell reprogramming

Year:  2014        PMID: 25554730      PMCID: PMC4279953          DOI: 10.1007/s11515-014-1326-y

Source DB:  PubMed          Journal:  Front Biol (Beijing)        ISSN: 1674-7984


  245 in total

Review 1.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

Review 2.  MicroRNAs in embryonic stem cell function and fate.

Authors:  Gustavo Tiscornia; Juan Carlos Izpisúa Belmonte
Journal:  Genes Dev       Date:  2010-12-15       Impact factor: 11.361

3.  A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity.

Authors:  Li Ding; Maciej Paszkowski-Rogacz; Anja Nitzsche; Mikolaj Michal Slabicki; Anne-Kristin Heninger; Ingrid de Vries; Ralf Kittler; Magno Junqueira; Andrej Shevchenko; Herbert Schulz; Norbert Hubner; Michael Xavier Doss; Agapios Sachinidis; Juergen Hescheler; Roberto Iacone; Konstantinos Anastassiadis; A Francis Stewart; M Teresa Pisabarro; Antonio Caldarelli; Ina Poser; Mirko Theis; Frank Buchholz
Journal:  Cell Stem Cell       Date:  2009-04-02       Impact factor: 24.633

4.  SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells.

Authors:  Xinyi Lu; Jonathan Göke; Friedrich Sachs; Pierre-Étienne Jacques; Hongqing Liang; Bo Feng; Guillaume Bourque; Paula A Bubulya; Huck-Hui Ng
Journal:  Nat Cell Biol       Date:  2013-09-08       Impact factor: 28.824

5.  Argonaute-2-null embryonic stem cells are retarded in self-renewal and differentiation.

Authors:  P Chandra Shekar; Adnan Naim; D Partha Sarathi; Satish Kumar
Journal:  J Biosci       Date:  2011-09       Impact factor: 1.826

6.  A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Authors:  Na-Yu Chia; Yun-Shen Chan; Bo Feng; Xinyi Lu; Yuriy L Orlov; Dimitri Moreau; Pankaj Kumar; Lin Yang; Jianming Jiang; Mei-Sheng Lau; Mikael Huss; Boon-Seng Soh; Petra Kraus; Pin Li; Thomas Lufkin; Bing Lim; Neil D Clarke; Frederic Bard; Huck-Hui Ng
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

7.  Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies.

Authors:  Sylvie Souquere; Guillaume Beauclair; Francis Harper; Archa Fox; Gérard Pierron
Journal:  Mol Biol Cell       Date:  2010-09-29       Impact factor: 4.138

8.  Dicer is essential for mouse development.

Authors:  Emily Bernstein; Sang Yong Kim; Michelle A Carmell; Elizabeth P Murchison; Heather Alcorn; Mamie Z Li; Alea A Mills; Stephen J Elledge; Kathryn V Anderson; Gregory J Hannon
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

9.  Genome-wide identification of targets and function of individual MicroRNAs in mouse embryonic stem cells.

Authors:  Sophie A Hanina; William Mifsud; Thomas A Down; Katsuhiko Hayashi; Dónal O'Carroll; Kaiqin Lao; Eric A Miska; M Azim Surani
Journal:  PLoS Genet       Date:  2010-10-21       Impact factor: 5.917

10.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

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  14 in total

1.  The RNA exosome contributes to gene expression regulation during stem cell differentiation.

Authors:  Marta Lloret-Llinares; Evdoxia Karadoulama; Yun Chen; Luke A Wojenski; Geno J Villafano; Jette Bornholdt; Robin Andersson; Leighton Core; Albin Sandelin; Torben Heick Jensen
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

Review 2.  Regulation of pluripotency and reprogramming by RNA binding proteins.

Authors:  Dan Li; Mohamed S Kishta; Jianlong Wang
Journal:  Curr Top Dev Biol       Date:  2020-02-25       Impact factor: 4.897

3.  The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis.

Authors:  Bruno Di Stefano; En-Ching Luo; Chuck Haggerty; Stefan Aigner; Jocelyn Charlton; Justin Brumbaugh; Fei Ji; Inés Rabano Jiménez; Katie J Clowers; Aaron J Huebner; Kendell Clement; Inna Lipchina; Marit A C de Kort; Anthony Anselmo; John Pulice; Mattia F M Gerli; Hongcang Gu; Steven P Gygi; Ruslan I Sadreyev; Alexander Meissner; Gene W Yeo; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2019-10-03       Impact factor: 24.633

4.  The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development.

Authors:  Louis R Ghanem; Andrew Kromer; Ian M Silverman; Priya Chatterji; Elizabeth Traxler; Alfredo Penzo-Mendez; Mitchell J Weiss; Ben Z Stanger; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2015-11-02       Impact factor: 4.272

5.  Heterogeneous nuclear ribonucleoprotein A1 post-transcriptionally regulates Drp1 expression in neuroblastoma cells.

Authors:  So Jung Park; Heejin Lee; Doo Shin Jo; Yoon Kyung Jo; Ji Hyun Shin; Han Byeol Kim; Hae Mi Seo; David C Rubinsztein; Jae-Young Koh; Eun Kyung Lee; Dong-Hyung Cho
Journal:  Biochim Biophys Acta       Date:  2015-10-28

6.  RBM5 reduces small cell lung cancer growth, increases cisplatin sensitivity and regulates key transformation-associated pathways.

Authors:  Julie J Loiselle; Justin G Roy; Leslie C Sutherland
Journal:  Heliyon       Date:  2016-11-29

7.  Meditation & yoga: Impact on oxidative DNA damage & dysregulated sperm transcripts in male partners of couples with recurrent pregnancy loss.

Authors:  Vidhu Dhawan; Manoj Kumar; Dipika Deka; Neena Malhotra; Vatsla Dadhwal; Neeta Singh; Rima Dada
Journal:  Indian J Med Res       Date:  2018-12       Impact factor: 2.375

8.  Concurrent binding to DNA and RNA facilitates the pluripotency reprogramming activity of Sox2.

Authors:  Linlin Hou; Yuanjie Wei; Yingying Lin; Xiwei Wang; Yiwei Lai; Menghui Yin; Yanpu Chen; Xiangpeng Guo; Senbin Wu; Yindi Zhu; Jie Yuan; Muqddas Tariq; Na Li; Hao Sun; Huating Wang; Xiaofei Zhang; Jiekai Chen; Xichen Bao; Ralf Jauch
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

Review 9.  Role of extracellular RNA-carrying vesicles in cell differentiation and reprogramming.

Authors:  Peter J Quesenberry; Jason Aliotta; Maria Chiara Deregibus; Giovanni Camussi
Journal:  Stem Cell Res Ther       Date:  2015-09-03       Impact factor: 6.832

Review 10.  The role of miRNA biogenesis and DDX17 in tumorigenesis and cancer stemness.

Authors:  Kou-Juey Wu
Journal:  Biomed J       Date:  2020-04-13       Impact factor: 4.910

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