| Literature DB >> 25552984 |
Abstract
The structures of the ammonium salts of phen-oxy-acetic acid, NH4 (+)·C8H6O3 (-), (I), (4-fluoro-phen-oxy)acetic acid, NH4 (+)·C8H5FO3 (-), (II), and the herbicidally active (4-chloro-2-methyl-phen-oxy)acetic acid (MCPA), NH4 (+)·C9H8ClO3 (-)·0.5H2O, (III) have been determined. All have two-dimensional layered structures based on inter-species ammonium N-H⋯O hydrogen-bonding associations, which give core substructures consisting primarily of conjoined cyclic motifs. The crystals of (I) and (II) are isomorphous with the core comprising R 1 (2)(5), R 1 (2)(4) and centrosymmetric R 4 (2)(8) ring motifs, giving two-dimensional layers lying parallel to (100). In (III), the water mol-ecule of solvation lies on a crystallographic twofold rotation axis and bridges two carboxyl O atoms in an R 4 (4)(12) hydrogen-bonded motif, creating two R 4 (3)(10) rings, which together with a conjoined centrosymmetric R 4 (2)(8) ring incorporating both ammonium cations, generate two-dimensional layers lying parallel to (100). No π-π ring associations are present in any of the structures.Entities:
Keywords: MCPA; ammonium carboxylates; crystal structure; herbicides; hydrogen bonding; phenoxyacetic acid salts
Year: 2014 PMID: 25552984 PMCID: PMC4257399 DOI: 10.1107/S160053681402488X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1Molecular conformation and atom labelling for (I), with inter-species hydrogen bonds shown as a dashed lines (see Table 1 ▶ for details). Non-H atoms are shown as 40% probability displacement ellipsoids.
Figure 2Molecular conformation and atom labelling for (II), with inter-species hydrogen bonds shown as dashed lines (see Table 2 ▶ for details). Non-H atoms are shown as 40% probability displacement ellipsoids.
Figure 3Molecular conformation and atom labelling for (III), with inter-species hydrogen bonds shown as dashed lines (see Table 3 ▶ for details). Non-H atoms are shown as 40% probability displacement ellipsoids.
Hydrogen-bond geometry (, ) for (I)
|
|
| H |
|
|
|---|---|---|---|---|
| N1H11O13 | 0.96 | 1.92 | 2.849(3) | 163 |
| N1H11O14 | 0.96 | 2.55 | 3.330(3) | 138 |
| N1H12O13i | 0.85 | 2.03 | 2.867(3) | 172 |
| N1H13O11ii | 0.90 | 2.39 | 3.202(3) | 150 |
| N1H13O13ii | 0.90 | 2.15 | 2.869(3) | 136 |
| N1H14O14iii | 0.84 | 1.95 | 2.788(3) | 178 |
Symmetry codes: (i) ; (ii) ; (iii) .
Hydrogen-bond geometry (, ) for (II)
|
|
| H |
|
|
|---|---|---|---|---|
| N1H11O13 | 0.90 | 1.95 | 2.847(2) | 177 |
| N1H11O14 | 0.90 | 2.55 | 3.347(2) | 135 |
| N1H12O13i | 0.97 | 1.88 | 2.847(3) | 173 |
| N1H13O11ii | 0.96 | 2.36 | 3.172(2) | 142 |
| N1H13O13ii | 0.96 | 2.13 | 2.892(2) | 135 |
| N1H14O14iii | 0.89 | 1.91 | 2.793(2) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 4The two-dimensional hydrogen-bonded network structure of (I), which is equivalent to that of the isomorphous compound (II). Hydrogen bonds are shown as dashed lines and non-associative H-atoms have been omitted [for symmetry codes see Tables 1 ▶ and 2 ▶].
Hydrogen-bond geometry (, ) for (III)
|
|
| H |
|
|
|---|---|---|---|---|
| N1H11O13i | 0.82 | 2.21 | 2.998(4) | 161 |
| N1H12O14ii | 0.82 | 2.09 | 2.886(4) | 166 |
| N1H13O13iii | 0.84 | 2.04 | 2.877(4) | 173 |
| N1H14O13 | 0.82 | 2.00 | 2.798(4) | 163 |
| O1 | 0.88 | 1.95 | 2.809(4) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 5A partial extension of the basic cation–anion hydrogen-bonding associations in the structure of (III), showing conjoined cyclic (12), (10) and (8) ring motifs. [Symmetry code: (iv) −x + 1, y, −z + . For other codes, see Table 3 ▶].
Figure 6The two-dimensional hydrogen-bonded network structure of (III) in the unit cell, viewed along b.
Experimental details
| (I) | (II) | (III) | |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | NH4 +C8H7O3 | NH4 +C8H6FO3 | NH4 +C9H8ClNO3 0.5H2O |
|
| 169.17 | 187.17 | 226.65 |
| Crystal system, space group | Monoclinic, | Monoclinic, | Monoclinic, |
| Temperature (K) | 200 | 200 | 200 |
|
| 17.824(2), 7.1453(6), 6.7243(7) | 18.386(2), 7.1223(6), 6.7609(6) | 38.0396(9), 4.4560(8), 12.944(5) |
| () | 90.321(9) | 93.399(8) | 104.575(5) |
|
| 856.38(15) | 883.79(14) | 2123.5(9) |
|
| 4 | 4 | 8 |
| Radiation type | Mo | Mo | Mo |
| (mm1) | 0.10 | 0.12 | 0.35 |
| Crystal size (mm) | 0.35 0.25 0.10 | 0.26 0.20 0.05 | 0.35 0.35 0.10 |
| Data collection | |||
| Diffractometer | Oxford Diffraction Gemini-S CCD detector | Oxford Diffraction Gemini-S CCD detector | Oxford Diffraction Gemini-S CCD detector |
| Absorption correction | Multi-scan ( | Multi-scan ( | Multi-scan ( |
|
| 0.920, 0.980 | 0.960, 0.980 | 0.913, 0.980 |
| No. of measured, independent and observed [ | 5450, 1686, 1218 | 5619, 1738, 1304 | 6215, 2087, 1771 |
|
| 0.052 | 0.033 | 0.030 |
| (sin /)max (1) | 0.617 | 0.617 | 0.617 |
| Refinement | |||
|
| 0.063, 0.163, 1.10 | 0.053, 0.116, 1.10 | 0.036, 0.091, 1.03 |
| No. of reflections | 1686 | 1738 | 2087 |
| No. of parameters | 109 | 118 | 132 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
| max, min (e 3) | 0.29, 0.24 | 0.16, 0.22 | 0.32, 0.28 |
Computer programs: CrysAlis PRO (Agilent, 2013 ▶), SIR92 (Altomare et al., 1993 ▶), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶).
| NH4+·C9H8ClNO3−·0.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 1819 reflections |
| θ = 4.4–28.1° | |
| µ = 0.35 mm−1 | |
| β = 104.575 (5)° | Plate, colourless |
| 0.35 × 0.35 × 0.10 mm | |
| Oxford Diffraction Gemini-S CCD-detector diffractometer | 2087 independent reflections |
| Radiation source: Enhance (Mo) X-ray source | 1771 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.077 pixels mm-1 | θmax = 26.0°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6215 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2087 reflections | (Δ/σ)max < 0.001 |
| 132 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl4 | 0.24818 (1) | 0.32330 (12) | 0.36021 (4) | 0.0372 (2) | |
| O11 | 0.39197 (3) | 0.8996 (3) | 0.46961 (9) | 0.0262 (4) | |
| O13 | 0.45425 (3) | 1.2161 (3) | 0.49906 (10) | 0.0296 (4) | |
| O14 | 0.44789 (4) | 1.4021 (3) | 0.65332 (10) | 0.0339 (4) | |
| C1 | 0.35808 (5) | 0.7686 (4) | 0.44981 (13) | 0.0224 (5) | |
| C2 | 0.34876 (5) | 0.5869 (4) | 0.35836 (13) | 0.0246 (5) | |
| C3 | 0.31491 (5) | 0.4496 (4) | 0.33324 (14) | 0.0269 (5) | |
| C4 | 0.29091 (5) | 0.4918 (4) | 0.39679 (14) | 0.0264 (5) | |
| C5 | 0.30027 (5) | 0.6675 (4) | 0.48684 (14) | 0.0275 (6) | |
| C6 | 0.33390 (5) | 0.8070 (4) | 0.51321 (14) | 0.0258 (5) | |
| C12 | 0.40205 (5) | 1.0812 (4) | 0.56298 (14) | 0.0242 (5) | |
| C13 | 0.43762 (5) | 1.2444 (4) | 0.57156 (14) | 0.0234 (5) | |
| C21 | 0.37517 (5) | 0.5430 (5) | 0.29002 (15) | 0.0370 (6) | |
| O1W | 0.50000 | 1.8306 (4) | 0.75000 | 0.0464 (7) | |
| N1 | 0.46781 (3) | 0.7274 (3) | 0.37900 (10) | 0.0156 (4) | |
| H3 | 0.30820 | 0.32800 | 0.27310 | 0.0320* | |
| H5 | 0.28420 | 0.69260 | 0.52960 | 0.0330* | |
| H6 | 0.34030 | 0.92710 | 0.57380 | 0.0310* | |
| H121 | 0.40420 | 0.95550 | 0.62550 | 0.0290* | |
| H122 | 0.38300 | 1.22720 | 0.56190 | 0.0290* | |
| H211 | 0.39700 | 0.65450 | 0.31980 | 0.0550* | 0.500 |
| H212 | 0.36440 | 0.61300 | 0.21890 | 0.0550* | 0.500 |
| H213 | 0.38090 | 0.33380 | 0.28790 | 0.0550* | 0.500 |
| H214 | 0.36460 | 0.41300 | 0.23130 | 0.0550* | 0.500 |
| H215 | 0.39710 | 0.45450 | 0.33210 | 0.0550* | 0.500 |
| H216 | 0.38060 | 0.73370 | 0.26320 | 0.0550* | 0.500 |
| H11W | 0.48390 | 1.71260 | 0.70860 | 0.0700* | |
| H11 | 0.49010 | 0.73870 | 0.39810 | 0.0190* | |
| H12 | 0.45970 | 0.71470 | 0.31450 | 0.0190* | |
| H13 | 0.46250 | 0.57360 | 0.40950 | 0.0190* | |
| H14 | 0.45930 | 0.86670 | 0.40680 | 0.0190* |
| Cl4 | 0.0264 (3) | 0.0466 (3) | 0.0378 (3) | −0.0121 (2) | 0.0064 (2) | −0.0044 (2) |
| O11 | 0.0233 (7) | 0.0335 (7) | 0.0230 (6) | −0.0071 (5) | 0.0083 (5) | −0.0075 (5) |
| O13 | 0.0293 (7) | 0.0279 (6) | 0.0355 (7) | −0.0036 (6) | 0.0155 (6) | −0.0015 (6) |
| O14 | 0.0340 (8) | 0.0378 (7) | 0.0268 (7) | −0.0094 (6) | 0.0020 (6) | −0.0054 (6) |
| C1 | 0.0215 (9) | 0.0222 (8) | 0.0224 (9) | −0.0010 (7) | 0.0037 (7) | 0.0028 (7) |
| C2 | 0.0253 (9) | 0.0277 (9) | 0.0198 (8) | 0.0005 (7) | 0.0041 (7) | 0.0002 (7) |
| C3 | 0.0278 (10) | 0.0287 (9) | 0.0223 (9) | −0.0021 (8) | 0.0027 (8) | −0.0023 (8) |
| C4 | 0.0217 (9) | 0.0277 (9) | 0.0277 (9) | −0.0031 (7) | 0.0023 (8) | 0.0037 (8) |
| C5 | 0.0230 (10) | 0.0332 (10) | 0.0282 (9) | 0.0003 (8) | 0.0099 (8) | 0.0017 (8) |
| C6 | 0.0259 (10) | 0.0281 (9) | 0.0234 (9) | −0.0011 (8) | 0.0062 (7) | −0.0022 (8) |
| C12 | 0.0244 (9) | 0.0276 (9) | 0.0208 (8) | −0.0026 (7) | 0.0059 (7) | −0.0033 (7) |
| C13 | 0.0247 (9) | 0.0215 (8) | 0.0232 (9) | 0.0029 (7) | 0.0045 (7) | 0.0042 (7) |
| C21 | 0.0331 (11) | 0.0520 (12) | 0.0278 (10) | −0.0083 (10) | 0.0114 (9) | −0.0126 (9) |
| O1W | 0.0421 (13) | 0.0259 (10) | 0.0667 (15) | 0.0000 | 0.0053 (11) | 0.0000 |
| N1 | 0.0141 (7) | 0.0159 (6) | 0.0179 (6) | −0.0006 (5) | 0.0060 (5) | −0.0004 (5) |
| Cl4—C4 | 1.744 (3) | C3—C4 | 1.387 (3) |
| O11—C1 | 1.379 (3) | C4—C5 | 1.375 (3) |
| O11—C12 | 1.425 (3) | C5—C6 | 1.386 (3) |
| O13—C13 | 1.263 (3) | C12—C13 | 1.515 (3) |
| O14—C13 | 1.248 (3) | C3—H3 | 0.9300 |
| O1W—H11W | 0.8800 | C5—H5 | 0.9300 |
| O1W—H11Wi | 0.8800 | C6—H6 | 0.9300 |
| N1—H12 | 0.8200 | C12—H121 | 0.9700 |
| N1—H11 | 0.8200 | C12—H122 | 0.9700 |
| N1—H13 | 0.8400 | C21—H216 | 0.9600 |
| N1—H14 | 0.8200 | C21—H211 | 0.9600 |
| C1—C2 | 1.404 (3) | C21—H212 | 0.9600 |
| C1—C6 | 1.389 (3) | C21—H213 | 0.9600 |
| C2—C21 | 1.509 (3) | C21—H214 | 0.9600 |
| C2—C3 | 1.388 (3) | C21—H215 | 0.9600 |
| C1—O11—C12 | 115.95 (13) | C2—C3—H3 | 120.00 |
| H11W—O1W—H11Wi | 107.00 | C4—C3—H3 | 120.00 |
| H12—N1—H14 | 114.00 | C4—C5—H5 | 120.00 |
| H13—N1—H14 | 104.00 | C6—C5—H5 | 120.00 |
| H11—N1—H12 | 114.00 | C5—C6—H6 | 120.00 |
| H11—N1—H13 | 105.00 | C1—C6—H6 | 120.00 |
| H11—N1—H14 | 108.00 | C13—C12—H122 | 109.00 |
| H12—N1—H13 | 111.00 | C13—C12—H121 | 109.00 |
| O11—C1—C2 | 115.26 (16) | O11—C12—H121 | 109.00 |
| O11—C1—C6 | 124.41 (15) | O11—C12—H122 | 109.00 |
| C2—C1—C6 | 120.33 (17) | H121—C12—H122 | 108.00 |
| C1—C2—C21 | 120.32 (17) | C2—C21—H211 | 109.00 |
| C1—C2—C3 | 118.30 (17) | C2—C21—H212 | 109.00 |
| C3—C2—C21 | 121.37 (16) | C2—C21—H213 | 109.00 |
| C2—C3—C4 | 120.77 (16) | C2—C21—H214 | 110.00 |
| C3—C4—C5 | 120.76 (18) | C2—C21—H215 | 109.00 |
| Cl4—C4—C3 | 119.22 (14) | C2—C21—H216 | 109.00 |
| Cl4—C4—C5 | 120.01 (15) | H214—C21—H215 | 109.00 |
| C4—C5—C6 | 119.37 (17) | H214—C21—H216 | 109.00 |
| C1—C6—C5 | 120.46 (16) | H215—C21—H216 | 110.00 |
| O11—C12—C13 | 112.31 (15) | H211—C21—H212 | 109.00 |
| O13—C13—O14 | 125.29 (18) | H211—C21—H213 | 110.00 |
| O13—C13—C12 | 120.17 (16) | H212—C21—H213 | 109.00 |
| O14—C13—C12 | 114.55 (16) | ||
| C12—O11—C1—C2 | −179.13 (15) | C1—C2—C3—C4 | 0.2 (3) |
| C12—O11—C1—C6 | 1.0 (2) | C21—C2—C3—C4 | 179.98 (17) |
| C1—O11—C12—C13 | −173.34 (14) | C2—C3—C4—Cl4 | 178.25 (14) |
| O11—C1—C2—C3 | −179.57 (15) | C2—C3—C4—C5 | −0.8 (3) |
| O11—C1—C2—C21 | 0.6 (2) | Cl4—C4—C5—C6 | −178.13 (14) |
| C6—C1—C2—C3 | 0.3 (3) | C3—C4—C5—C6 | 0.9 (3) |
| C6—C1—C2—C21 | −179.46 (17) | C4—C5—C6—C1 | −0.4 (3) |
| O11—C1—C6—C5 | 179.67 (16) | O11—C12—C13—O13 | 1.7 (2) |
| C2—C1—C6—C5 | −0.2 (3) | O11—C12—C13—O14 | −178.71 (15) |
| H··· | ||||
| N1—H11···O13ii | 0.82 | 2.21 | 2.998 (4) | 161 |
| N1—H12···O14iii | 0.82 | 2.09 | 2.886 (4) | 166 |
| N1—H13···O13iv | 0.84 | 2.04 | 2.877 (4) | 173 |
| N1—H14···O13 | 0.82 | 2.00 | 2.798 (4) | 163 |
| O1 | 0.88 | 1.95 | 2.809 (4) | 165 |