Literature DB >> 26594440

Crystal structure of ammonium (3,5-di-chloro-phen-oxy)acetate hemihydrate.

Graham Smith1.   

Abstract

In the structure of the title hydrated salt, NH4 (+)·C8H5Cl2O3 (-)·0.5H2O, where the anion derives from (3,5-di-chloro-phen-oxy)acetic acid, the ammonium cation is involved in extensive N-H⋯O hydrogen bonding with both carboxyl-ate and ether O-atom acceptors giving sheet structures lying parallel to (100). The water mol-ecule of solvation lies on a crystallographic twofold rotation axis and is involved in intra-sheet O-H⋯Ocarboxyl-ate hydrogen-bonding inter-actions. In the anion, the oxoacetate side chain assumes an antiperiplanar conformation with the defining C-O-C-C torsion angle = -171.33 (15)°.

Entities:  

Keywords:  (3,5-di­chloro­phen­oxy)acetic acid; crystal structure; hydrated salt; hydrogen bonding; phen­oxy­acetic acid herbicides; tryptaminium salt

Year:  2015        PMID: 26594440      PMCID: PMC4647378          DOI: 10.1107/S2056989015016345

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background on the phen­oxy­acetic acid herbicides, see: Zumdahl (2010 ▸). For examples of structures of a tryptaminium salt and a co-crystalline adduct with (3,5-di­chloro­phen­oxy)acetic acid, see: Smith & Lynch (2015 ▸); Lynch et al. (2003 ▸). For the structures of ammonium salts of other phen­oxy­acetic acids, see: Liu et al. (2009 ▸); Smith (2014 ▸).

Experimental

Crystal data

NH4C8H5Cl2O3 −·0.5H2O M = 247.07 Monoclinic, a = 39.818 (3) Å b = 4.3440 (4) Å c = 12.7211 (8) Å β = 98.098 (5)° V = 2178.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.58 mm−1 T = 200 K 0.40 × 0.12 × 0.05 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▸) T min = 0.948, T max = 0.980 6680 measured reflections 2146 independent reflections 1832 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.084 S = 1.08 2146 reflections 147 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.28 e Å−3

Data collection: CrysAlis PRO (Agilent, 2013 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸) within WinGX (Farrugia, 2012 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015016345/nk2232sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016345/nk2232Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016345/nk2232Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015016345/nk2232fig1.tif The mol­ecular configuration and atom-numbering scheme for the title hemi-hydrate salt, with non-H atoms shown as 40% probability ellipsoids. The water mol­ecule lies on a twofold rotation axis and inter-species hydrogen bonds are shown as dashed lines. Click here for additional data file. b . DOI: 10.1107/S2056989015016345/nk2232fig2.tif The two-dimensional sheet structure viewed along the b axis, with intra­molecular hydrogen bonds shown as dashed lines. For symmetry codes, see Table 1. CCDC reference: 1421868 Additional supporting information: crystallographic information; 3D view; checkCIF report
NH4+·C8H5Cl2O3·0.5H2OF(000) = 1016
Mr = 247.07Dx = 1.507 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2066 reflections
a = 39.818 (3) Åθ = 4.1–28.7°
b = 4.3440 (4) ŵ = 0.58 mm1
c = 12.7211 (8) ÅT = 200 K
β = 98.098 (5)°Prism, colourless
V = 2178.4 (3) Å30.40 × 0.12 × 0.05 mm
Z = 8
Oxford Diffraction Gemini-S CCD-detector diffractometer2146 independent reflections
Radiation source: Enhance (Mo) X-ray source1832 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.1°
ω scansh = −48→39
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −3→5
Tmin = 0.948, Tmax = 0.980l = −15→15
6680 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.034P)2 + 1.220P] where P = (Fo2 + 2Fc2)/3
2146 reflections(Δ/σ)max = 0.002
147 parametersΔρmax = 0.21 e Å3
5 restraintsΔρmin = −0.28 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl30.66552 (1)1.11332 (13)0.31644 (4)0.0401 (2)
Cl50.72836 (1)0.45912 (16)0.64617 (5)0.0517 (2)
O110.59904 (3)0.5049 (3)0.55326 (10)0.0340 (4)
O130.53963 (3)0.2408 (3)0.56560 (10)0.0325 (4)
O140.55624 (4)0.0775 (3)0.73120 (11)0.0384 (5)
C10.63101 (4)0.5896 (4)0.53513 (14)0.0268 (5)
C20.63218 (5)0.7850 (4)0.44879 (14)0.0282 (6)
C30.66354 (5)0.8742 (4)0.42535 (14)0.0288 (6)
C40.69369 (5)0.7798 (5)0.48405 (15)0.0338 (6)
C50.69140 (5)0.5888 (5)0.56904 (15)0.0322 (6)
C60.66063 (4)0.4896 (5)0.59619 (14)0.0280 (6)
C120.59684 (5)0.3252 (5)0.64620 (14)0.0314 (6)
C130.56109 (4)0.2087 (4)0.64708 (14)0.0274 (6)
O1W0.50000−0.3034 (5)0.750000.0456 (8)
N10.53131 (4)0.7283 (5)0.41888 (14)0.0332 (6)
H20.611900.854800.407200.0340*
H40.715000.843900.466500.0410*
H60.659900.356700.655100.0340*
H1210.603700.452300.710200.0380*
H1220.612600.148300.648200.0380*
H1W0.5153 (5)−0.185 (5)0.7335 (17)0.0400*
H110.5403 (5)0.568 (4)0.4560 (15)0.0320*
H120.5089 (4)0.732 (5)0.4100 (15)0.0320*
H130.5406 (5)0.744 (5)0.3632 (13)0.0320*
H140.5370 (5)0.904 (4)0.4539 (15)0.0320*
U11U22U33U12U13U23
Cl30.0507 (3)0.0386 (3)0.0329 (3)−0.0105 (2)0.0122 (2)0.0034 (2)
Cl50.0240 (3)0.0735 (5)0.0549 (4)−0.0024 (3)−0.0035 (2)0.0113 (3)
O110.0217 (7)0.0486 (9)0.0323 (7)−0.0008 (6)0.0055 (5)0.0128 (6)
O130.0252 (7)0.0387 (8)0.0330 (7)−0.0004 (6)0.0020 (6)0.0037 (6)
O140.0370 (8)0.0504 (9)0.0298 (7)−0.0067 (7)0.0112 (6)0.0059 (7)
C10.0240 (9)0.0309 (10)0.0264 (9)−0.0031 (8)0.0066 (7)−0.0046 (8)
C20.0278 (10)0.0319 (11)0.0250 (9)0.0002 (8)0.0040 (7)−0.0012 (8)
C30.0361 (11)0.0264 (10)0.0253 (9)−0.0054 (8)0.0096 (8)−0.0051 (8)
C40.0283 (10)0.0386 (12)0.0361 (11)−0.0098 (9)0.0098 (8)−0.0058 (9)
C50.0239 (10)0.0391 (12)0.0326 (11)−0.0020 (9)0.0002 (8)−0.0054 (9)
C60.0257 (10)0.0334 (11)0.0250 (9)−0.0020 (8)0.0035 (7)−0.0001 (8)
C120.0280 (10)0.0420 (12)0.0239 (9)−0.0028 (9)0.0024 (7)0.0062 (8)
C130.0265 (10)0.0294 (10)0.0277 (10)0.0032 (8)0.0088 (8)−0.0016 (8)
O1W0.0348 (12)0.0361 (13)0.0660 (15)0.00000.0073 (11)0.0000
N10.0282 (9)0.0392 (11)0.0325 (10)0.0027 (8)0.0050 (7)0.0076 (8)
Cl3—C31.7423 (18)C1—C61.387 (2)
Cl5—C51.743 (2)C1—C21.394 (2)
O11—C11.375 (2)C2—C31.380 (3)
O11—C121.430 (2)C3—C41.384 (3)
O13—C131.255 (2)C4—C51.376 (3)
O14—C131.251 (2)C5—C61.388 (3)
O1W—H1Wi0.85 (2)C12—C131.512 (3)
O1W—H1W0.85 (2)C2—H20.9500
N1—H130.847 (18)C4—H40.9500
N1—H120.884 (16)C6—H60.9500
N1—H110.888 (18)C12—H1220.9900
N1—H140.897 (18)C12—H1210.9900
C1—O11—C12116.79 (14)C4—C5—C6122.78 (18)
H1W—O1W—H1Wi105 (2)C1—C6—C5118.31 (17)
H12—N1—H13116.4 (18)O11—C12—C13110.87 (15)
H12—N1—H14103.2 (19)O13—C13—C12119.27 (15)
H11—N1—H12114.0 (19)O13—C13—O14126.01 (16)
H11—N1—H13108.5 (19)O14—C13—C12114.68 (16)
H13—N1—H14103.7 (19)C3—C2—H2121.00
H11—N1—H14110.4 (17)C1—C2—H2121.00
C2—C1—C6120.77 (16)C5—C4—H4121.00
O11—C1—C6123.80 (16)C3—C4—H4122.00
O11—C1—C2115.43 (15)C1—C6—H6121.00
C1—C2—C3118.23 (17)C5—C6—H6121.00
Cl3—C3—C2118.89 (14)O11—C12—H121109.00
Cl3—C3—C4118.22 (15)O11—C12—H122109.00
C2—C3—C4122.89 (17)C13—C12—H121109.00
C3—C4—C5117.02 (18)C13—C12—H122110.00
Cl5—C5—C4119.54 (16)H121—C12—H122108.00
Cl5—C5—C6117.68 (15)
C12—O11—C1—C2−175.05 (16)Cl3—C3—C4—C5−179.42 (15)
C12—O11—C1—C65.6 (3)C2—C3—C4—C50.0 (3)
C1—O11—C12—C13−171.33 (15)C3—C4—C5—Cl5179.67 (15)
O11—C1—C2—C3−178.93 (15)C3—C4—C5—C60.5 (3)
C6—C1—C2—C30.5 (3)Cl5—C5—C6—C1−179.64 (15)
O11—C1—C6—C5179.27 (17)C4—C5—C6—C1−0.4 (3)
C2—C1—C6—C5−0.1 (3)O11—C12—C13—O139.5 (2)
C1—C2—C3—Cl3178.97 (13)O11—C12—C13—O14−172.65 (15)
C1—C2—C3—C4−0.4 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O140.85 (2)1.99 (2)2.822 (2)166 (2)
N1—H11···O110.89 (2)2.50 (2)3.137 (2)129 (2)
N1—H11···O130.89 (2)1.99 (2)2.811 (2)153 (2)
N1—H12···O13ii0.88 (2)2.00 (2)2.862 (2)164 (2)
N1—H13···O14iii0.85 (2)2.03 (2)2.840 (2)161 (2)
N1—H14···O13iv0.90 (2)2.03 (2)2.894 (2)161 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1WH1WO140.85(2)1.99(2)2.822(2)166(2)
N1H11O110.89(2)2.50(2)3.137(2)129(2)
N1H11O130.89(2)1.99(2)2.811(2)153(2)
N1H12O13i 0.88(2)2.00(2)2.862(2)164(2)
N1H13O14ii 0.85(2)2.03(2)2.840(2)161(2)
N1H14O13iii 0.90(2)2.03(2)2.894(2)161(2)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ammonium 2-(2,4-dichloro-phen-oxy)acetate hemihydrate.

Authors:  Hui-Lian Liu; Shu-Hua Guo; Yun-Ying Li; Fang-Fang Jian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

3.  Two-dimensional hydrogen-bonded polymers in the crystal structures of the ammonium salts of phen-oxy-acetic acid, (4-fluoro-phen-oxy)acetic acid and (4-chloro-2-methyl-phen-oxy)acetic acid.

Authors:  Graham Smith
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-19

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.