Literature DB >> 26391513

A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber.

Jordi Pallarès1, Oriol Senan2, Roger Guimerà2,3, Anton Vernet1, Antoni Aguilar-Mogas2, Gemma Vilahur4, Lina Badimon4, Marta Sales-Pardo2, Salvatore Cito5.   

Abstract

Thrombus formation is a multiscale phenomenon triggered by platelet deposition over a protrombotic surface (eg. a ruptured atherosclerotic plaque). Despite the medical urgency for computational tools that aid in the early diagnosis of thrombotic events, the integration of computational models of thrombus formation at different scales requires a comprehensive understanding of the role and limitation of each modelling approach. We propose three different modelling approaches to predict platelet deposition. Specifically, we consider measurements of platelet deposition under blood flow conditions in a perfusion chamber for different time periods (3, 5, 10, 20 and 30 minutes) at shear rates of 212 s(-1), 1390 s(-1) and 1690 s(-1). Our modelling approaches are: i) a model based on the mass-transfer boundary layer theory; ii) a machine-learning approach; and iii) a phenomenological model. The results indicate that the three approaches on average have median errors of 21%, 20.7% and 14.2%, respectively. Our study demonstrates the feasibility of using an empirical data set as a proxy for a real-patient scenario in which practitioners have accumulated data on a given number of patients and want to obtain a diagnosis for a new patient about whom they only have the current observation of a certain number of variables.

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Year:  2015        PMID: 26391513      PMCID: PMC4585733          DOI: 10.1038/srep13606

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  36 in total

1.  Evaluation of different biological data and computational classification methods for use in protein interaction prediction.

Authors:  Yanjun Qi; Ziv Bar-Joseph; Judith Klein-Seetharaman
Journal:  Proteins       Date:  2006-05-15

2.  On the simultaneous motions of many blood cells.

Authors:  Eugene C Eckstein
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

3.  Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics.

Authors:  Peng Zhang; Chao Gao; Na Zhang; Marvin J Slepian; Yuefan Deng; Danny Bluestein
Journal:  Cell Mol Bioeng       Date:  2014-12-01       Impact factor: 2.321

4.  A revised model of platelet aggregation.

Authors:  S Kulkarni; S M Dopheide; C L Yap; C Ravanat; M Freund; P Mangin; K A Heel; A Street; I S Harper; F Lanza; S P Jackson
Journal:  J Clin Invest       Date:  2000-03       Impact factor: 14.808

5.  Effects of a novel platelet nitric oxide donor (LA816), aspirin, clopidogrel, and combined therapy in inhibiting flow- and lesion-dependent thrombosis in the porcine ex vivo model.

Authors:  Gemma Vilahur; E Segalés; E Salas; L Badimon
Journal:  Circulation       Date:  2004-09-21       Impact factor: 29.690

6.  Characterization of the relative thrombogenicity of atherosclerotic plaque components: implications for consequences of plaque rupture.

Authors:  A Fernández-Ortiz; J J Badimon; E Falk; V Fuster; B Meyer; A Mailhac; D Weng; P K Shah; L Badimon
Journal:  J Am Coll Cardiol       Date:  1994-06       Impact factor: 24.094

Review 7.  Improving bioscience research reporting: the ARRIVE guidelines for reporting animal research.

Authors:  Carol Kilkenny; William J Browne; Innes C Cuthill; Michael Emerson; Douglas G Altman
Journal:  PLoS Biol       Date:  2010-06-29       Impact factor: 8.029

8.  Platelet motion near a vessel wall or thrombus surface in two-dimensional whole blood simulations.

Authors:  Tyler Skorczewski; Lindsay Crowl Erickson; Aaron L Fogelson
Journal:  Biophys J       Date:  2013-04-16       Impact factor: 4.033

9.  Dynamics of GPIIb/IIIa-mediated platelet-platelet interactions in platelet adhesion/thrombus formation on collagen in vitro as revealed by videomicroscopy.

Authors:  Dipti Patel; Heikki Väänänen; Markéta Jirousková; Thomas Hoffmann; Carol Bodian; Barry S Coller
Journal:  Blood       Date:  2003-02-01       Impact factor: 22.113

10.  Modelling the effect of a functional endothelium on the development of in-stent restenosis.

Authors:  Hannan Tahir; Carles Bona-Casas; Alfons G Hoekstra
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

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